Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2720 230 4e-58 seq2124 159 6e-37 seq1987 140 5e-31 seq721 118 2e-24 seq1042 113 7e-23 seq68 111 3e-22 seq57 104 4e-20 seq98 102 1e-19 seq697 100 5e-19 seq1910 98.7 2e-18 seq984 89.7 8e-16 seq1738 80.6 4e-13 seq731 75.2 2e-11 >seq2720 Length=46158 Score = 230 bits (254), Expect = 4e-58 Identities = 201/244 (82%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| Sbjct 20528 CAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 20586 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT--C 134 | |||| ||||| | || | |||||||||||||| | | || ||| | Sbjct 20587 A-CTTCGTGCGGCTGAACACCGCTTGTCCCTCTAAGAAGTCTTCTGG--ACTTGAGTATC 20643 Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 | | |||||||| ||| || |||||| ||||||||||||| ||||||||||||||| Sbjct 20644 CA-GTAACTATTTAGTAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCAC 20702 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| Sbjct 20703 TCCACCAACTAAGAACGGCCATGCACCACCAACCACCGAATCAAGAAAGAGCTCTCAATC 20762 Query 255 TGTC 258 |||| Sbjct 20763 TGTC 20766 >seq2124 Length=175168 Score = 159 bits (176), Expect = 6e-37 Identities = 108/121 (89%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 138 GGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCC 197 ||| ||| |||||||| || ||||||||||||||||||||||||||||||||| |||| Sbjct 144358 GGGACTAGTTAGCAGGCTATAGTCTCGTTCGTTATCGGAATTAACCAGACAAATTGCTCC 144417 Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||| |||||||||||||||||||||||| || |||| ||||||||||| ||||||||| Sbjct 144418 ACCAGCTAAGAACGGCCATGCACCACCACTCACCGAATGAAGAAAGAGCTCTCAATCTGT 144477 Query 258 C 258 | Sbjct 144478 C 144478 Score = 111 bits (122), Expect = 3e-22 Identities = 97/121 (80%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 138 GGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCC 197 ||| ||| |||||||| || |||||||| |||||||||||||||||||| ||||| ||| Sbjct 139895 GGGACTAGTTAGCAGGCTAGGGTCTCGTCCGTTATCGGAATTAACCAGAAAAATCGATCC 139954 Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 | ||||||||| ||| | || || || | ||||||||||||||| ||||||| | Sbjct 139955 TCTAACTAAGAATGGCTA------ACTACTCACATAATCAAGAAAGAGCTCTCAATCTAT 140008 Query 258 C 258 | Sbjct 140009 C 140009 >seq1987 Length=278239 Score = 140 bits (154), Expect = 5e-31 Identities = 83/87 (95%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 28520 TCGGAATTAACCAGACAAATCGCTCCACCTACTAAGAACGGCCATGCACCACCACCCACC 28461 Query 232 GAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||| Sbjct 28460 GAATCAAGAAAGAGCTATCAATCTGTC 28434 >seq721 Length=926455 Score = 118 bits (130), Expect = 2e-24 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 242790 GTCTTGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCTATGC 242731 Query 219 ACCACCACCCATAGAATCAA 238 ||||||||||| |||| || Sbjct 242730 ACCACCACCCACCGAATTAA 242711 >seq1042 Length=645749 Score = 113 bits (124), Expect = 7e-23 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 486739 TCCTTCAGTGTAGCGCGCGTGCGTCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 486680 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| | || |||| | |||| |||||||||||||| Sbjct 486679 -CTCAATC-TCGTGCGGCTAGGAGCCGCCTGTCCCTCTAAGAAG 486638 >seq68 Length=2344888 Score = 111 bits (122), Expect = 3e-22 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 |||||||| ||| |||||||||| ||||||||| ||||||||| |||||| ||||||||| Sbjct 1681932 TATCGGAAATAAGCAGACAAATCGCTCCACCAAGTAAGAACGGACATGCATCACCACCCA 1681873 Query 230 TAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| | || ||||||| Sbjct 1681872 CAGAATCAAGAAAGACATCTCTATCTGTC 1681844 >seq57 Length=3924461 Score = 104 bits (114), Expect = 4e-20 Identities = 77/88 (88%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct 1760029 AATTAACCAGACAAATCCCTCCACCATTTAAGAACGGCCATGCACCACCACCCACCGAAT 1759970 Query 236 CAAGAAAGAGCT--ATCAATCTGTCCTC 261 |||| |||| || |||| || |||||| Sbjct 1759969 CAAG-AAGATCTTAATCAGTCAGTCCTC 1759943 >seq98 Length=1778995 Score = 102 bits (112), Expect = 1e-19 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 67311 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGACATCACAGACCTGTTATTG 67252 Query 72 C 72 | Sbjct 67251 C 67251 >seq697 Length=1225817 Score = 100 bits (110), Expect = 5e-19 Identities = 87/104 (84%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 815047 TCCTTCAGTGTAGCGCACATGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 815106 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| | || ||| || |||| ||||||||||||| Sbjct 815107 -CTCAATC-TCGTGCGGCAGG-AGCCGCCTATCCCTCTAAGAAG 815147 >seq1910 Length=176071 Score = 98.7 bits (108), Expect = 2e-18 Identities = 64/69 (93%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 102546 TCCTTCAGTGTAGCGCACGTGCGGCCCAGAACATCTGAGGGCATCACAGACCTGTTATTG 102487 Query 72 CCTCAAACT 80 ||||| || Sbjct 102486 -CTCAATCT 102479 >seq984 Length=694557 Score = 89.7 bits (98), Expect = 8e-16 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 224 ||| |||| ||||| ||||| |||| ||||| |||| ||||||||||||| | ||| | Sbjct 562969 TTCATTATAGGAATCAACCATACAAGCCACTCTACCAGCTAAGAACGGCCAAGTGCCATC 562910 Query 225 ACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||| ||| |||||||||||| | ||||||| Sbjct 562909 ATCCATTGAACCAAGAAAGAGCTGTATATCTGTC 562876 >seq1738 Length=448664 Score = 80.6 bits (88), Expect = 4e-13 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226 ||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 435832 TTAACCAGACAAATCACTCCACCAACTAATAATGGCCATGCACCACCAC 435784 >seq731 Length=1103319 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 6/61 (10%) Strand=Plus/Plus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAAC------TAAGAACGGCCATGCACCA 222 ||||||||||||| |||||||||| |||||||||| ||||||||||||||||||| Sbjct 667346 TTATCGGAATTAATCAGACAAATCTCTCCACCAACTAACAGTAAGAACGGCCATGCACCA 667405 Query 223 C 223 | Sbjct 667406 C 667406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796608630552