Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2720 89.7 5e-16 seq19 75.2 1e-11 >seq2720 Length=46158 Score = 89.7 bits (98), Expect = 5e-16 Identities = 127/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT--TGCTCGAATACATTACCATG 70 ||||||||||||||||||||| | | |||| ||| || ||| ||||| |||| Sbjct 21254 TTTACTTTGAAAAAATTAGAGTGCTTCAAGCGGGCTTTAGTGCCTGAATATTCGTGCATG 21195 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 |||||||||||||||| | ||||||||||||| ||||| | |||| ||||| | Sbjct 21194 GAATAATAGAATAGGATCT-TGGTTCTATTTTGTTGGTTT-TCTGACCCGAGATAATGGT 21137 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| || |||||| | |||| || | ||||| |||||||||| Sbjct 21136 TAAGAGGGACAGACGGGGGCATTCGTATCGCTGCGTGAGAGGTGGAATTCTTGGA 21082 >seq19 Length=3776289 Score = 75.2 bits (82), Expect = 1e-11 Identities = 81/103 (79%), Gaps = 7/103 (7%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCT---CGAATAC--ATTACC 67 ||| ||||||| ||||||||| | | ||||||||| || ||||||| | | | Sbjct 2532810 TTTTCTTTGAACAAATTAGAGTGCTTAAAGCAGGCAGCAGCCGCCCGAATACCGAGTGC- 2532752 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||||||| ||||||||| | |||||||||||||| ||||| Sbjct 2532751 ATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT 2532710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511877031680