Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq2709 86.0 1e-14 seq3099 80.6 4e-13 seq1094 77.0 5e-12 seq95 77.0 5e-12 seq2441 75.2 2e-11 >seq2709 Length=48058 Score = 86.0 bits (94), Expect = 1e-14 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 158 CCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCA 217 ||||||||||||| |||||||| || ||| | | || ||||| ||||| ||||||| Sbjct 13099 CCTTTTGCTTCTCCAGCAGCTTCTTTTTGCGGGTGATATCGCCGCCATAGCACTTGGCCA 13040 Query 218 GTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGG 277 | || | ||| | | ||||| || | ||| || || |||| ||||| ||||| | Sbjct 13039 GCACATCCTTGCGCACCGCCTTCACCGTTTCCCGGGCGATAATCTTACCGCCGATGGCCG 12980 Query 278 CCTGGATCGCGACGTCG 294 ||||||||| ||| ||| Sbjct 12979 CCTGGATCGGGACTTCG 12963 >seq3099 Length=1637421 Score = 80.6 bits (88), Expect = 4e-13 Identities = 87/114 (76%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 102 AAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTT 161 || |||| || | || | ||| || || |||||| ||||||| ||||||||||| |||| Sbjct 542658 AATGCTTTTT-GCGGTACTTCTACATTTCCCACTTGCTTCATACGTTTTTTACCTTCCTT 542716 Query 162 TTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGC 215 || || ||||| |||||||||||||| | || || || |||||||| || Sbjct 542717 CTGTTTTTCAAGAAGCTTGCGCTTACGTGAGATATCGCCTCCATAGCATTTTGC 542770 >seq1094 Length=2708314 Score = 77.0 bits (84), Expect = 5e-12 Identities = 92/124 (74%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 93 ACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTT 152 || |||||||| |||| | | || | ||||| || || | ||||||||||||| || Sbjct 900903 ACGGCAAGGAAAGCTTTCT-GCGGCACCTCCACATTTCCAATCTGCTTCATGCGTTTCTT 900845 Query 153 ACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTT 212 || || ||||| || ||||| || ||||||||||| | |||||||| || || || Sbjct 900844 TCCTTTTTTCTGCTTTTCCAGCAGTTTTCGCTTACGGCTGATATCACCGCCATAACACTT 900785 Query 213 GGCC 216 |||| Sbjct 900784 GGCC 900781 >seq95 Length=1800565 Score = 77.0 bits (84), Expect = 5e-12 Identities = 68/84 (81%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 90 AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTT 149 || ||||| | || || |||| ||||||| || || || |||||| | ||||| ||||| Sbjct 1620546 AGTACCGCTAAAAATGCCTCTT-GTGGAATCTCAACATTACCCACTTGTTTCATACGTTT 1620604 Query 150 TTTACCGGCCTTTTGCTTCTCAAG 173 |||||| || |||||||||||||| Sbjct 1620605 TTTACCTGCTTTTTGCTTCTCAAG 1620628 >seq2441 Length=2995558 Score = 75.2 bits (82), Expect = 2e-11 Identities = 122/172 (71%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 90 AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTT 149 || || |||||||| || | || | || | |||||| ||||| | | ||||||||||| Sbjct 41739 AGTACGGCAAGGAAAGCCTTTT-GAGGGACTTCCACATTGCCTATCTGTTTCATGCGTTT 41797 Query 150 TTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCA 209 || || ||| || || || | || || || |||||||| | ||||| || || || Sbjct 41798 CTTTCCTTTCTTCTGTTTTTCCAATAGTTTACGTTTACGGCTGATATCACCTCCATAACA 41857 Query 210 TTTGGCCAGTACGTTCTTT-CTGAGAGCCTTGACGGAGGTCCGCGCAATGAT 260 ||||| ||||| ||||| | | |||||| | | |||||||||||| Sbjct 41858 TTTGG-CAGTAACATCTTTACGTACAGCCTTTATTGTCTCCCGCGCAATGAT 41908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838192143872