Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq1991 118 2e-21 seq2441 100 4e-16 seq4013 93.3 7e-14 seq2330 93.3 7e-14 seq1948 93.3 7e-14 seq1599 93.3 7e-14 seq1210 93.3 7e-14 seq1164 93.3 7e-14 seq5010 87.8 3e-12 seq3436 87.8 3e-12 seq2760 87.8 3e-12 seq1094 87.8 3e-12 seq373 87.8 3e-12 seq126 87.8 3e-12 >seq1991 Length=147557 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 196163 CAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTG 196222 ||||||||||| || || | || || || || | | ||||| || ||||| ||||| Sbjct 6573 CAGATGCGCTTTGACCTCAATGAGGGTTTTCCCGTACTGACCACAAAAAAACTGCATCTA 6514 Query 196223 CGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTG 196282 || || ||||| |||||||| |||||||| ||||| || || ||||| || || || || Sbjct 6513 CGCTCGATCATACATGAACTTCTGTGGTTTCTCAAGGGAGATACCAATATAAAATATCTT 6454 Query 196283 AATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCG 196342 | || || || | || ||| ||||||||||| | | ||| |||||||| ||| Sbjct 6453 CACGATAATAACGTTACGATATGGGACGAGTGGGCGGATGCCGACGGCAACCTGGGCCCG 6394 Query 196343 GTTTACGGTAAGCAGTGGCG 196362 || ||||| | |||||||| Sbjct 6393 GTCTACGGATACCAGTGGCG 6374 >seq2441 Length=2995558 Score = 100 bits (110), Expect = 4e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 196116 ACAAAGCTGACCGTACCGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGATGCGCTTC 196174 |||||| |||||||| |||||||| || | | | ||| |||| |||||||| || Sbjct 2867137 ACAAAGAAGACCGTACAGGCACAGGAACAATCAGCGTAT-TCGGACACCAGATGCGTTTT 2867079 Query 196175 GATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATT 196234 || || | || || ||||| | || || ||||| || || ||| ||||| ||| Sbjct 2867078 GACCTTAACGATGGTTTCCCATGCCTGACTACCAAGAAGCTTCACCTGAAATCCATTATT 2867019 Query 196235 CATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGT 196294 |||||||| || ||||| | || || || || || | |||||||| | |||||||| Sbjct 2867018 CATGAACTTCTATGGTTTTTGAAAGGTGATACAAATGTTAAGTACCTCCAAGACAACGGA 2866959 Query 196295 GTCTCTATCTGGAACGAGTGGGCGAACGA 196323 || ||||||||| || ||||| |||| Sbjct 2866958 GTACGTATCTGGAATGAATGGGCAGACGA 2866930 >seq4013 Length=24576 Score = 93.3 bits (102), Expect = 7e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 3383 GTAGTTCAGCTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 3442 Query 3857 C 3857 | Sbjct 3443 C 3443 >seq2330 Length=1066040 Score = 93.3 bits (102), Expect = 7e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 21579 GTAGTTCAGCTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 21520 Query 3857 C 3857 | Sbjct 21519 C 21519 >seq1948 Length=475166 Score = 93.3 bits (102), Expect = 7e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 65 GTAGTTCAGCTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 6 Query 3857 C 3857 | Sbjct 5 C 5 >seq1599 Length=3738065 Score = 93.3 bits (102), Expect = 7e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 254 GTAGTTCAGCTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 195 Query 3857 CAGT 3860 | || Sbjct 194 CCGT 191 >seq1210 Length=1188399 Score = 93.3 bits (102), Expect = 7e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 1016596 GTAGTTCAGCTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 1016655 Query 3857 C 3857 | Sbjct 1016656 C 1016656 >seq1164 Length=549247 Score = 93.3 bits (102), Expect = 7e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| |||||||||||||||| |||||| Sbjct 388123 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGTGGTCGCGGGTTCGAGTCCCGT 388064 Query 3857 C 3857 | Sbjct 388063 C 388063 >seq5010 Length=14642 Score = 87.8 bits (96), Expect = 3e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 5608 GTAGTTCAGTTGGTTAGAATACATGCCTGTCACGCATGGGGTCGCGGGTTCGAGTCCCGT 5549 Query 3857 C 3857 | Sbjct 5548 C 5548 >seq3436 Length=2346199 Score = 87.8 bits (96), Expect = 3e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 837868 GTAGTTCAGTTGGTTAGAATACATGCCTGTCACGCATGGGGTCGCGGGTTCGAGTCCCGT 837927 Query 3857 C 3857 | Sbjct 837928 C 837928 >seq2760 Length=692328 Score = 87.8 bits (96), Expect = 3e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 10912 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 10853 Query 3857 C 3857 | Sbjct 10852 C 10852 Score = 87.8 bits (96), Expect = 3e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 464483 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 464542 Query 3857 C 3857 | Sbjct 464543 C 464543 >seq1094 Length=2708314 Score = 87.8 bits (96), Expect = 3e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 1549114 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 1549055 Query 3857 C 3857 | Sbjct 1549054 C 1549054 >seq373 Length=1274844 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||| | ||||||||||||| | |||||||||||||| |||||| Sbjct 707174 GTAGTTCAGTTGGTTAGAATGCCTGCCTGTCACGCAGGAGGTCGCGGGTTCGAGTCCCGT 707115 Query 3857 CAGTCCTGCCATA 3869 | || |||||| Sbjct 707114 CCGTTGCGCCATA 707102 >seq126 Length=3533043 Score = 87.8 bits (96), Expect = 3e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 377216 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 377275 Query 3857 C 3857 | Sbjct 377276 C 377276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771303299010240