Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq3496 102 1e-16 seq1991 102 1e-16 seq126 96.9 4e-15 seq1971 89.7 7e-13 seq1164 89.7 7e-13 seq9033 87.8 2e-12 seq3812 87.8 2e-12 seq3611 87.8 2e-12 seq2787 87.8 2e-12 seq1885 87.8 2e-12 seq1702 87.8 2e-12 seq3436 86.0 8e-12 seq2441 86.0 8e-12 seq1924 86.0 8e-12 seq1599 86.0 8e-12 >seq3496 Length=15201 Score = 102 bits (112), Expect = 1e-16 Identities = 68/75 (91%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| Sbjct 7699 CGGGGAATTAGCTCAGTTGGCTAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGA 7640 Query 19388 ATCCGATATTCTCCA 19402 |||||||||||||| Sbjct 7639 CTCCGATATTCTCCA 7625 >seq1991 Length=147557 Score = 102 bits (112), Expect = 1e-16 Identities = 68/75 (91%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| Sbjct 145188 CGGGGAATTAGCTCAGTTGGCTAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGA 145129 Query 19388 ATCCGATATTCTCCA 19402 |||||||||||||| Sbjct 145128 CTCCGATATTCTCCA 145114 >seq126 Length=3533043 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||| ||||||||| | | |||||||||||| ||||| ||||||||| |||||||||| Sbjct 3221219 CGGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCATCGGTTCGA 3221278 Query 19388 ATCCGATATTCTCCA 19402 ||||||||||||||| Sbjct 3221279 ATCCGATATTCTCCA 3221293 >seq1971 Length=148721 Score = 89.7 bits (98), Expect = 7e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 19320 ACTACTTTGGCGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTT 19377 ||||| | | |||| ||||||||| | | |||||||||||| ||||| ||||||||| Sbjct 104917 ACTACCTAAGAGGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTC 104858 Query 19378 ATCGGTTCGAATCCGATATTCTCCATAA 19405 | ||||||||||||| ||||||||| || Sbjct 104857 AACGGTTCGAATCCGTTATTCTCCACAA 104830 >seq1164 Length=549247 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 19528 ATTCCTCTATAGCTCAATCGGC-AGAGCATCTGACTGTTAATCAGAGGGTTCCTGGTTCG 19586 ||||||| ||||||| |||| ||||||||||||||||||||||||||| | ||||||| Sbjct 296222 ATTCCTCCTTAGCTCAGTCGGTTAGAGCATCTGACTGTTAATCAGAGGGTCCTTGGTTCG 296281 Query 19587 AGTCCAGGTGGAGGAG 19602 || ||| | ||||||| Sbjct 296282 AGCCCAAGAGGAGGAG 296297 >seq9033 Length=91990 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||| ||||||||| | | |||||||||||| ||||| ||||||||| | |||||||| Sbjct 76303 CGGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGA 76362 Query 19388 ATCCGATATTCTCCA 19402 ||||| ||||||||| Sbjct 76363 ATCCGTTATTCTCCA 76377 >seq3812 Length=12487 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||| ||||||||| | | |||||||||||| ||||| ||||||||| | |||||||| Sbjct 3486 CGGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGA 3427 Query 19388 ATCCGATATTCTCCA 19402 ||||| ||||||||| Sbjct 3426 ATCCGTTATTCTCCA 3412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||| ||||||||| | | |||||||||||| ||||| ||||||||| | |||||||| Sbjct 8489 CGGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGA 8430 Query 19388 ATCCGATATTCTCCA 19402 ||||| ||||||||| Sbjct 8429 ATCCGTTATTCTCCA 8415 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 19331 GGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAA 19388 |||| ||||||||| | | |||||||||||| ||||| ||||||||| | ||||||||| Sbjct 3340 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 3281 Query 19389 TCCGATATTCTCCA 19402 |||| ||||||||| Sbjct 3280 TCCGTTATTCTCCA 3267 >seq3611 Length=178444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||| ||||||||| | | |||||||||||| ||||| ||||||||| | |||||||| Sbjct 46350 CGGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGA 46409 Query 19388 ATCCGATATTCTCCA 19402 ||||| ||||||||| Sbjct 46410 ATCCGTTATTCTCCA 46424 >seq2787 Length=1710943 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||| ||||||||| | | |||||||||||| ||||| ||||||||| | |||||||| Sbjct 407370 CGGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGA 407311 Query 19388 ATCCGATATTCTCCA 19402 ||||| ||||||||| Sbjct 407310 ATCCGTTATTCTCCA 407296 >seq1885 Length=148911 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||| ||||||||| | | |||||||||||| ||||| ||||||||| | |||||||| Sbjct 14338 CGGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGA 14397 Query 19388 ATCCGATATTCTCCA 19402 ||||| ||||||||| Sbjct 14398 ATCCGTTATTCTCCA 14412 >seq1702 Length=707479 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/77 (86%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 19331 GGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAA 19388 |||| ||||||||| | | |||||||||||| ||||| ||||||||| | ||||||||| Sbjct 83846 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 83787 Query 19389 TCCGATATTCTCCATAA 19405 |||| ||||||||| || Sbjct 83786 TCCGTTATTCTCCACAA 83770 >seq3436 Length=2346199 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 19331 GGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAA 19388 |||| ||||||||| | | |||||||||||| ||||| ||||||||| | ||||||||| Sbjct 1073352 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 1073411 Query 19389 TCCGATATTCTCCA 19402 |||| ||||||||| Sbjct 1073412 TCCGTTATTCTCCA 1073425 >seq2441 Length=2995558 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 19331 GGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAA 19388 |||| ||||||||| | | |||||||||||| ||||| ||||||||| | ||||||||| Sbjct 256325 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 256266 Query 19389 TCCGATATTCTCCA 19402 |||| ||||||||| Sbjct 256265 TCCGTTATTCTCCA 256252 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 19331 GGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAA 19388 |||| ||||||||| | | |||||||||||| ||||| ||||||||| | ||||||||| Sbjct 1377763 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 1377704 Query 19389 TCCGATATTCTCCA 19402 |||| ||||||||| Sbjct 1377703 TCCGTTATTCTCCA 1377690 >seq1924 Length=441942 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 19331 GGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAA 19388 |||| ||||||||| | | |||||||||||| ||||| ||||||||| | ||||||||| Sbjct 335707 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 335648 Query 19389 TCCGATATTCTCCA 19402 |||| ||||||||| Sbjct 335647 TCCGTTATTCTCCA 335634 >seq1599 Length=3738065 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 19331 GGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAA 19388 |||| ||||||||| | | |||||||||||| ||||| ||||||||| | ||||||||| Sbjct 337734 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 337675 Query 19389 TCCGATATTCTCCA 19402 |||| ||||||||| Sbjct 337674 TCCGTTATTCTCCA 337661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633883498608000