Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq1913 170 7e-40 >seq1913 Length=212763 Score = 170 bits (188), Expect = 7e-40 Identities = 387/576 (67%), Gaps = 6/576 (1%) Strand=Plus/Minus Query 10 TTTGGCACGGGAAGTGGCCTTGCTTTGGCTTTTCGAGGCGTTCGCCGAGAAACGGCTTGA 69 |||||| ||||| || || ||| || | ||| | || || || ||||| ||| | Sbjct 156032 TTTGGCGCGGGAGGTCGC-TTGTTTAGA--TTTAGCCGCATTGGCACTAAAACGACTT-A 155977 Query 70 CGAAGGATTTGCAGCTCGGTGATCTGCGCCTTCTTTCTTGGCGTTGTCCGACAGCAGTTG 129 | || |||| | | ||| | || ||||| || ||||||||| || || | |||| | Sbjct 155976 CAAACGATT-GTAATTCGCTAATTTGCGCTTT-TTTCTTGGCATTATCAGCTAGCAAACG 155919 Query 130 CTCGCGGGACTGGGTCGCCACGGTCATGTACTCGTCGTAGTTGCCCGGGAACAGGCGCAG 189 || || | || || || ||||||| || || ||||| || || || | | ||| || Sbjct 155918 TTCACGCGCTTGCGTGGCAGCGGTCATATAGTCATCGTAATTACCTGGATAAATGCGTAG 155859 Query 190 CTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTGACGGTCGTG 249 || || ||||| | || ||||| || ||||| || | || || || || || || || Sbjct 155858 TTCACCATAGTCTAAATCCGCCATATGAGTACATACCATATTAAGAAAATGGCGATCATG 155799 Query 250 AGAGATGATGATCATCAGGCTGGAACGCTGGGTCAGGATATTTTCCAGCCAGCGGATGGT 309 ||||| ||||||||| || ||| | | || ||||| || ||||| || || || Sbjct 155798 GGAGATAATGATCATCGTACTTTCACGTTCATTAAGTATATTCTCTAGCCAACGAATAGT 155739 Query 310 GTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATCGGAAAACAG 369 | || || | || ||||||||||| || | || || | || |||| ||||| || Sbjct 155738 ATCAATATCAAGGTTATTGGTCGGTTCATCCAATAATAGAATATCTGGATTTGAAAATAG 155679 Query 370 CGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCTCATCGGACCGAA 429 || || || | |||||| |||| ||||| || || | | ||| ||||| || | Sbjct 155678 GGCTTGAGCTAACAATACGCGCAATTTCCAACCAGGCGCAATTTCACTCATTAACCCATA 155619 Query 430 GTGCTGCTCCAGCGGAATACCCAGACCCAGCAGCAGCTCACCGGCACGGGATTCGGCGGT 489 ||| ||||| | |||||||| | ||| | | || ||||| || || | |||||| | Sbjct 155618 GTGTTGCTCAATAGGAATACCTACACCTAATAAAAGTTCACCTGCGCGCGCTTCGGCACT 155559 Query 490 GTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGCCACGGCCATGCCGTCTTCTTC 549 || || ||||| || ||| | | ||| || ||||| || || |||||||| Sbjct 155558 ATATCCATCCATTTCTGCGTATTGAACTTCAAGATCGGCAACCTTATACCCATCTTCTTC 155499 Query 550 GCTCATTTCCGGCAGCGAGTAAATACCATCACGCTC 585 |||||||| | | | ||||||| ||| || || Sbjct 155498 ACTCATTTCAGCTAAGGCATAAATACGATCGCGTTC 155463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1881492133164