Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= AAMG01001690.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value seq3761 114 3e-23 >seq3761 Length=42113 Score = 114 bits (126), Expect = 3e-23 Identities = 276/414 (67%), Gaps = 8/414 (2%) Strand=Plus/Minus Query 12 ACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCCACCTGGGTG 71 || ||||| || || ||||| | || ||||| || || ||||| || || || || || Sbjct 8783 ACCTCACGAGCCCCAGCGCCTAACGCTGATTCTCGAATAGCACGCCGTTCAACTTGTGTC 8724 Query 72 G-ACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTGTTTTCGTG 130 | || | | || || |||| | || |||||||| |||| | |||||| || || Sbjct 8723 GCACCTACT-GGTACACAGACTAATACGCGAGGGCTTGGCTTTAAGAAACTATTACTATG 8665 Query 131 AACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCGATCACGCC 190 |||| || || | || | |||||| || || ||| ||||| || ||||| Sbjct 8664 TACCTGACGAATAAAATGTTGTAACATCTTTTCAGTTACCGAGAAATCGGCAATAACGCC 8605 Query 191 GTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTTGGC 250 |||||||| || ||||| || |||||||| || ||||| | || | ||| | || || Sbjct 8604 ATCTTTCATTGGGCGAATAGCCGCAATATTTCCAGGTGTTCTTCCCAACATTTGTTTTGC 8545 Query 251 CTCGGTGCCGACGGCAACGACACTTTTCTGATTACC--ATGGGTC----CGAATGGCCAC 304 | | || || ||| | |||||| | || |||| | | || | ||| ||||| Sbjct 8544 CGCTTGTCCTACAGCAGCAACACTTCTTGGAGTACCTGAACGTTCTTGTCTAATTGCCAC 8485 Query 305 AACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGGCAGT 364 || ||||||||||| | || || || | | || ||||| | || || || || Sbjct 8484 CACAGATGGCTCATTTAATACAATGCCCTGACCTTTGACATAAATCAAAGTATTAGCGGT 8425 Query 365 GCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACAT 418 |||| ||||| || ||||| | || |||| ||||| | |||||| | ||| Sbjct 8424 CCCCAAATCAATTGAGAGATCATTAGAGAACACTCCACGAATTTTCTTTAGCAT 8371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1353524753376