Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1397 159 1e-36 seq243 150 6e-34 seq41 150 6e-34 seq118 141 3e-31 seq2924 140 1e-30 seq156 138 4e-30 seq245 104 8e-20 seq887 102 3e-19 seq488 89.7 2e-15 seq151 80.6 9e-13 >seq1397 Length=1722 Score = 159 bits (176), Expect = 1e-36 Identities = 102/110 (93%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 ||||||| ||||||||||| |||||||||||||| |||||||| |||||| |||||||| Sbjct 279 CCAAGCC-GTTCCCTTGGCAGTGGTTTCGCTAGAAAGTAGATACGGACAGAGGGAATCTT 337 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 ||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 338 GTTAATCCATTCATGCGCGTCACTAATTAGATGACCAGACATTTGGCTAC 387 >seq243 Length=53491 Score = 150 bits (166), Expect = 6e-34 Identities = 114/134 (85%), Gaps = 8/134 (6%) Strand=Plus/Minus Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 ||||||||| |||||||||||| | ||| |||||||||||||||||||||||| Sbjct 23500 CGTCACTAACCAGATGACGAGGCCTGTGG-------AAGAGAGTCATAGTTACTCCCGCC 23448 Query 461 GTTTACCCGCGCTTGGTTG-AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATC 519 |||||||||| ||| || |||||||| | || ||||||||||||||||||||||||| Sbjct 23447 GTTTACCCGCCCTTTTTTTTAATTTCTTTGCGTTAACATTCAGAGCACTGGGCAGAAATC 23388 Query 520 ACATTGCGTCAACA 533 |||||||||||||| Sbjct 23387 ACATTGCGTCAACA 23374 Score = 125 bits (138), Expect = 2e-26 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 31719 GAGAGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 31660 Query 416 GACGAGGCATTTGGCTA 432 ||| ||||||||||||| Sbjct 31659 GACCAGGCATTTGGCTA 31643 >seq41 Length=80284 Score = 150 bits (166), Expect = 6e-34 Identities = 152/195 (78%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||| ||| |||| | ||||| ||| | || | | | ||||||||||||| | Sbjct 19983 CTCCCATCTATGCTACGCTTCTCACGTCGCCTTACGATACCAGGCTAGAGTCAAGCTATA 20042 Query 297 CAGGGTCTTCTTTCCCCGCT--GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 | || ||||||| |||||| ||| || || | ||| ||||||| ||||||||||| Sbjct 20043 CGGGTTCTTCTTCTCCCGCTAAAATTTCG--AAAACTGTTTCCTTGGCAGTGGTTTCGCT 20100 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 || ||||||||||||||| ||||| ||| |||||||||||| || ||||||||||| | Sbjct 20101 AGGAAGTAGATAGGGACAGAGGGAACCTC--TAATCCATTCATACGTGTCACTAATTACA 20158 Query 415 TGACGAGGCATTTGG 429 ||| ||||||||||| Sbjct 20159 TGAGGAGGCATTTGG 20173 >seq118 Length=45620 Score = 141 bits (156), Expect = 3e-31 Identities = 92/101 (91%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| | Sbjct 37950 CCTTAAGAGAGTCATAGTTACCCCCGCCGTTTACCCGCCCTTTTTTGAATTTCTTCAAGT 37891 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||| ||||||||||||||||| |||||||| Sbjct 37890 TGACATTCAGAGCTTTGGGCAGAAATCACATTACGTCAACA 37850 >seq2924 Length=532 Score = 140 bits (154), Expect = 1e-30 Identities = 104/121 (86%), Gaps = 3/121 (2%) Strand=Plus/Plus Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC- 459 |||||| ||| ||||| |||| | | | |||||||||||||||||||||||||||| Sbjct 412 CGTCACAAATACAATGACAAGGCCTGTAGAAACCTTAAGAGAGTCATAGTTACTCCCGCT 471 Query 460 --CGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 ||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 472 GCCGTTTACCCGCACTTTTTTGAATTTCTTCACGTTGACATTCAGAGCACTGGGCAGAAA 531 Query 518 T 518 | Sbjct 532 T 532 >seq156 Length=39377 Score = 138 bits (152), Expect = 4e-30 Identities = 90/99 (91%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||| | |||||| ||||||||||||||||||||| | |||||||||||||| | Sbjct 21361 CCTTAAGAGCGGCATAGTCACTCCCGCCGTTTACCCGCGCCTTTTTGAATTTCTTCACGT 21420 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||| ||||| ||||||||||| Sbjct 21421 TGACATTCAGAGCACTGGGCAAAAATCGCATTGCGTCAA 21459 >seq245 Length=101329 Score = 104 bits (114), Expect = 8e-20 Identities = 87/105 (83%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA--- 489 ||||| |||||||||||||||||||| |||||||||| |||| || ||| |||| Sbjct 6596 CCTTAGGAGAGTCATAGTTACTCCCGACGTTTACCCGTGCTTTTGTGTCTTTTTTCAATT 6655 Query 490 CTTTGACATT--CAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 | || || || ||||||||||| ||||||||||||||||||||| Sbjct 6656 CATTCACGTTGACAGAGCACTGGACAGAAATCACATTGCGTCAAC 6700 >seq887 Length=26824 Score = 102 bits (112), Expect = 3e-19 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||| |||||||||| || |||||| ||||||||||||||| || ||||| |||||||||| Sbjct 9289 ATATTAGATAGGGATAGAGGGAATATCGTTAATCCATTCACGCACGTCAGTAATTAGATG 9348 Query 417 ACGAGGCATTTGGCTA 432 ||||| |||||||||| Sbjct 9349 ACGAGACATTTGGCTA 9364 >seq488 Length=48172 Score = 89.7 bits (98), Expect = 2e-15 Identities = 62/70 (89%), Gaps = 3/70 (4%) Strand=Plus/Minus Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 ||||||||| |||||||||||| ||||| |||| |||||||||||||||||||||| Sbjct 19186 CGTCACTAACCAGATGACGAGGCCTTTGGAAACCT---GAGAGTCATAGTTACTCCCGCC 19130 Query 461 GTTTACCCGC 470 |||||||||| Sbjct 19129 GTTTACCCGC 19120 >seq151 Length=3115758 Score = 80.6 bits (88), Expect = 9e-13 Identities = 69/84 (82%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC-ACTTTGACATTCAGAG 504 |||| || ||||| |||||| ||||||| |||||||| | | || |||| |||||||| Sbjct 636977 ATAGGTATTCCCGTAGTTTACGCGCGCTTTCTTGAATTTTTCCCACGTTGAAATTCAGAG 637036 Query 505 CACTGGGCAGAAATCACATTGCGT 528 ||||| |||||| |||||| |||| Sbjct 637037 CACTGAGCAGAAGTCACATCGCGT 637060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635109099232