Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22]
5,559 sequences; 249,185,056 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq1397 159 1e-36
seq243 150 6e-34
seq41 150 6e-34
seq118 141 3e-31
seq2924 140 1e-30
seq156 138 4e-30
seq245 104 8e-20
seq887 102 3e-19
seq488 89.7 2e-15
seq151 80.6 9e-13
>seq1397
Length=1722
Score = 159 bits (176), Expect = 1e-36
Identities = 102/110 (93%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383
||||||| ||||||||||| |||||||||||||| |||||||| |||||| ||||||||
Sbjct 279 CCAAGCC-GTTCCCTTGGCAGTGGTTTCGCTAGAAAGTAGATACGGACAGAGGGAATCTT 337
Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433
||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 338 GTTAATCCATTCATGCGCGTCACTAATTAGATGACCAGACATTTGGCTAC 387
>seq243
Length=53491
Score = 150 bits (166), Expect = 6e-34
Identities = 114/134 (85%), Gaps = 8/134 (6%)
Strand=Plus/Minus
Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460
||||||||| |||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 23500 CGTCACTAACCAGATGACGAGGCCTGTGG-------AAGAGAGTCATAGTTACTCCCGCC 23448
Query 461 GTTTACCCGCGCTTGGTTG-AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATC 519
|||||||||| ||| || |||||||| | || |||||||||||||||||||||||||
Sbjct 23447 GTTTACCCGCCCTTTTTTTTAATTTCTTTGCGTTAACATTCAGAGCACTGGGCAGAAATC 23388
Query 520 ACATTGCGTCAACA 533
||||||||||||||
Sbjct 23387 ACATTGCGTCAACA 23374
Score = 125 bits (138), Expect = 2e-26
Identities = 74/77 (96%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 31719 GAGAGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 31660
Query 416 GACGAGGCATTTGGCTA 432
||| |||||||||||||
Sbjct 31659 GACCAGGCATTTGGCTA 31643
>seq41
Length=80284
Score = 150 bits (166), Expect = 6e-34
Identities = 152/195 (78%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||| ||| |||| | ||||| ||| | || | | | ||||||||||||| |
Sbjct 19983 CTCCCATCTATGCTACGCTTCTCACGTCGCCTTACGATACCAGGCTAGAGTCAAGCTATA 20042
Query 297 CAGGGTCTTCTTTCCCCGCT--GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354
| || ||||||| |||||| ||| || || | ||| ||||||| |||||||||||
Sbjct 20043 CGGGTTCTTCTTCTCCCGCTAAAATTTCG--AAAACTGTTTCCTTGGCAGTGGTTTCGCT 20100
Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414
|| ||||||||||||||| ||||| ||| |||||||||||| || ||||||||||| |
Sbjct 20101 AGGAAGTAGATAGGGACAGAGGGAACCTC--TAATCCATTCATACGTGTCACTAATTACA 20158
Query 415 TGACGAGGCATTTGG 429
||| |||||||||||
Sbjct 20159 TGAGGAGGCATTTGG 20173
>seq118
Length=45620
Score = 141 bits (156), Expect = 3e-31
Identities = 92/101 (91%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |
Sbjct 37950 CCTTAAGAGAGTCATAGTTACCCCCGCCGTTTACCCGCCCTTTTTTGAATTTCTTCAAGT 37891
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||| ||||||||||||||||| ||||||||
Sbjct 37890 TGACATTCAGAGCTTTGGGCAGAAATCACATTACGTCAACA 37850
>seq2924
Length=532
Score = 140 bits (154), Expect = 1e-30
Identities = 104/121 (86%), Gaps = 3/121 (2%)
Strand=Plus/Plus
Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC- 459
|||||| ||| ||||| |||| | | | ||||||||||||||||||||||||||||
Sbjct 412 CGTCACAAATACAATGACAAGGCCTGTAGAAACCTTAAGAGAGTCATAGTTACTCCCGCT 471
Query 460 --CGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517
||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 472 GCCGTTTACCCGCACTTTTTTGAATTTCTTCACGTTGACATTCAGAGCACTGGGCAGAAA 531
Query 518 T 518
|
Sbjct 532 T 532
>seq156
Length=39377
Score = 138 bits (152), Expect = 4e-30
Identities = 90/99 (91%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
||||||||| | |||||| ||||||||||||||||||||| | |||||||||||||| |
Sbjct 21361 CCTTAAGAGCGGCATAGTCACTCCCGCCGTTTACCCGCGCCTTTTTGAATTTCTTCACGT 21420
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
||||||||||||||||||||| ||||| |||||||||||
Sbjct 21421 TGACATTCAGAGCACTGGGCAAAAATCGCATTGCGTCAA 21459
>seq245
Length=101329
Score = 104 bits (114), Expect = 8e-20
Identities = 87/105 (83%), Gaps = 5/105 (5%)
Strand=Plus/Plus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA--- 489
||||| |||||||||||||||||||| |||||||||| |||| || ||| ||||
Sbjct 6596 CCTTAGGAGAGTCATAGTTACTCCCGACGTTTACCCGTGCTTTTGTGTCTTTTTTCAATT 6655
Query 490 CTTTGACATT--CAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532
| || || || ||||||||||| |||||||||||||||||||||
Sbjct 6656 CATTCACGTTGACAGAGCACTGGACAGAAATCACATTGCGTCAAC 6700
>seq887
Length=26824
Score = 102 bits (112), Expect = 3e-19
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||| |||||||||| || |||||| ||||||||||||||| || ||||| ||||||||||
Sbjct 9289 ATATTAGATAGGGATAGAGGGAATATCGTTAATCCATTCACGCACGTCAGTAATTAGATG 9348
Query 417 ACGAGGCATTTGGCTA 432
||||| ||||||||||
Sbjct 9349 ACGAGACATTTGGCTA 9364
>seq488
Length=48172
Score = 89.7 bits (98), Expect = 2e-15
Identities = 62/70 (89%), Gaps = 3/70 (4%)
Strand=Plus/Minus
Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460
||||||||| |||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 19186 CGTCACTAACCAGATGACGAGGCCTTTGGAAACCT---GAGAGTCATAGTTACTCCCGCC 19130
Query 461 GTTTACCCGC 470
||||||||||
Sbjct 19129 GTTTACCCGC 19120
>seq151
Length=3115758
Score = 80.6 bits (88), Expect = 9e-13
Identities = 69/84 (82%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC-ACTTTGACATTCAGAG 504
|||| || ||||| |||||| ||||||| |||||||| | | || |||| ||||||||
Sbjct 636977 ATAGGTATTCCCGTAGTTTACGCGCGCTTTCTTGAATTTTTCCCACGTTGAAATTCAGAG 637036
Query 505 CACTGGGCAGAAATCACATTGCGT 528
||||| |||||| |||||| ||||
Sbjct 637037 CACTGAGCAGAAGTCACATCGCGT 637060
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635109099232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |