Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq911 232 2e-56 >seq911 Length=74078 Score = 232 bits (256), Expect = 2e-56 Identities = 534/801 (67%), Gaps = 10/801 (1%) Strand=Plus/Minus Query 37652 ATGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGAC 37711 ||| |||||||| | | || ||||| | || | || |||| || | ||| ||| Sbjct 47482 ATGCAACAATATCTGGCTTTAATGCAAAAAATTCTTGATGACGGTGTGGCGAAATCAGAT 47423 Query 37712 CGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGAT 37771 || || || || ||||| | || | || || | || | ||||| || || || | Sbjct 47422 CGCACTGGGGTTGGCACTTTATCCATTTTTGGTCATCAAATGCGCTTTAATTTGCAGCAA 47363 Query 37772 GGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTT 37831 || ||||||||||| || || ||||||| ||| | || || || ||| ||||| | ||| Sbjct 47362 GGCTTTCCGCTCGTCACCACAAAAAAATGTCATCTACGTTCTATTATTCATGAATTACTT 47303 Query 37832 TGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGG 37891 ||||||||||||||||| || || | ||| | || || ||| || || || ||| Sbjct 47302 TGGTTTTTAAAAGGCGAAACCAATATTGCTTATCTACATGACAATAATGTCACTATCTGG 47243 Query 37892 GATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCG 37951 ||||||||||| || ||||||| ||||| || || |||| || |||||||| | Sbjct 47242 GATGAGTGGGCCGATAAAAACGGTGATCTAGGACCCGTTTATGGTAAACAATGGCGTGCT 47183 Query 37952 TGGAAGGGAGCAGACGGGAA--AACCATCGACCAGATCGCATGGGTTGTCGAAGAGATCA 38009 ||| | | ||| || || || ||| ||| || || ||| | ||| | |||| Sbjct 47182 TGGCAAGCAGCGGATGGTAAGCAAC--GCGATCAAATTAGTGAGGTGATTGAACAAATCA 47125 Query 38010 AACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACG 38069 || ||||| ||||||| || | | || ||||||||||| | ||| | || Sbjct 47124 AAACTAATCCCGATTCACGTCGTTTAATCGTATCAGCTTGGAATGTCGGAGAGCTCGAGC 47065 Query 38070 AGATGAAGCTGCCGCCGTGTCATTACGC---CTTTCAGTTCTATGTCGCCAACGGCCGGT 38126 ||||| || |||| || | |||| ||| ||||| ||||| || ||||| Sbjct 47064 AGATGGCTTTGGCGCCATGCC---ACGCTTTCTTCCAGTTTTATGTGGCGGACGGCAAAC 47008 Query 38127 TGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCG 38186 |||| ||| | | ||||| || ||| ||||||||| | || ||||| || | Sbjct 47007 TGTCTTGCCAGCTTTATCAGCGTTCATGCGATGTGTTTTTAGGCCTACCTTTTAATATTG 46948 Query 38187 CGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAAC 38246 | |||||||| |||| |||||| |||| || ||||| || |||| || || || Sbjct 46947 CTAGCTACGCTTTGTTAGTACATATGATAGCGCAGCAATGTGATTTGGCGGTAGGCGATT 46888 Query 38247 TCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGC 38306 | ||| || || || || |||| | || || ||| |||||||| | | | | Sbjct 46887 TTGTTTGGACTGGTGGTGATACCCATCTTTATGCCAACCATATGGAACAAACACATTTAC 46828 Query 38307 AGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCTGAAACGGAAGCCGCCGTCTA 38366 | ||| || ||| ||| | || || ||| | ||| | || || || || || | Sbjct 46827 AATTGAGTCGTACGCCACGCGCACTCCCTAAGTTAGTGATTAAGCGCAAACCAAATTCGA 46768 Query 38367 TCTTTGACTATGAATACGACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGATTA 38426 | ||||| || | || |||||||| |||| | ||| |||||| |||| || |||| Sbjct 46767 TTTTTGATTACTGTTTTGAAGACTTTGAGATCGAGGACTATGATCCGTATCCTGCCATTA 46708 Query 38427 AAGCACCGGTGGCGGTTTAAA 38447 | |||||||| ||| |||||| Sbjct 46707 AGGCACCGGTAGCGATTTAAA 46687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130631376045350