Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq916 250 8e-62 >seq916 Length=289624 Score = 250 bits (276), Expect = 8e-62 Identities = 554/820 (68%), Gaps = 26/820 (3%) Strand=Plus/Plus Query 2100 TCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGA 2159 |||||||||||| |||||||| |||||| || |||| | || | ||| ||||| Sbjct 279665 TCCAATGATGAATATCATCAATGGTGGTGAACATGCAGATAATAACATTGATTTACAAGA 279724 Query 2160 ATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGA 2219 ||||||||| ||| | |||||| || | |||||||| | ||| ||| || || Sbjct 279725 ATTTATGATCCAACCAGTTGGTGCTAAAAGTGTGAAAGAAGCTATCCGTATGGGCGCGGA 279784 Query 2220 AATCTTCCACGCGCTTAA-GAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTG 2278 |||||||||| |||| |||| | || | | | || | | |||| | || |||| Sbjct 279785 AATCTTCCACAA-CTTAGCGAAAGTACTACACGCAAAAGGTATGGCAACATCTGTGGGTG 279843 Query 2279 ACGAAGGTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATCA 2338 | ||||||||||| ||||| || | || || |||| | | | |||| Sbjct 279844 ATGAAGGTGGTTTTGCACCAAACTTAAAATCAAATGCTGATGCATTAGTATGTATCGAAG 279903 Query 2339 AAGC--TATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGACTG 2396 |||| || | || ||| || ||| |||| |||| || || | | | | || || Sbjct 279904 AAGCCGTAACCAA--TGCGGGTTATAAGTTAGGTCAAGATGTCGTTCTTGCATTAGATTG 279961 Query 2397 TGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGG 2456 ||| | ||||| ||||| | |||| | | || | || | |||| |||| Sbjct 279962 TGCGGCTTCTGAGTTCTATAACAAAGAA----ACGGGTA--AATA---TGAATTAAAAGG 280012 Query 2457 TGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCG---ACTACCTTGAAGAATTGGT 2513 |||||| |||| | | || || || || | | ||||| | ||| |||| Sbjct 280013 TGAAGGTC-----GTTCATT-TACTTCACAAGAATTTGCTCACTACTTAGAACAATTAAC 280066 Query 2514 TAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTG 2573 || | || ||||| || |||| ||||| ||| | || |||| |||||||| ||||| Sbjct 280067 CAAAGACTATCCAATTGTCTCTATTGAAGACGGTTTAGATGAAAGTGACTGGGAAGGTTG 280126 Query 2574 GAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGT 2633 | || | | ||| || ||||| | |||||||||||| || ||||| || | || || Sbjct 280127 GGCATATTTAACTAAATTACTTGGCGATAAAGTTCAATTAGTGGGTGATGATCTTTTTGT 280186 Query 2634 AACTAACACTGCTTACCTTGAAA-AAGGTATTGCAGAACACGCTGCTAACTCAATCCTTA 2692 ||| || || | ||| ||| |||| |||| | || | |||||||||||| | | Sbjct 280187 AACGAATACAAAA-ATCTTCAAACAAGGGATTGAAAAAGGCATTGCTAACTCAATTTTAA 280245 Query 2693 TCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAG 2752 ||||| ||||||||||||| | | |||||||| ||| || | |||||||||||| Sbjct 280246 TCAAATTTAACCAAATCGGCTCCCTAACTGAAACCATTGCAGCGGTTAAAATGGCGAAAG 280305 Query 2753 AAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | || || || || || || | || || ||| |||||||| |||||| |||| || | Sbjct 280306 ACGCAGGTTATACGGCGGTCATTTCCCATCGTAGTGGTGAAACAGAAGATGCAACGATTG 280365 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 ||||| | || |||| | | || || ||||| || |||||||| || ||| | | Sbjct 280366 CTGATTTAGCTGTTGGACTTGCAGCCGGACAAATCAAAACAGGTTCTATGAGCCGTTCAG 280425 Query 2873 ACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 ||||||| ||||||||||||||| | | ||||| ||||| Sbjct 280426 ACCGTATGGCTAAATACAACCAACTAATCCGTATTGAAGA 280465 Score = 93.3 bits (102), Expect = 1e-14 Identities = 113/151 (75%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 1696 CGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTGAATCT 1755 |||||||| |||||||||| ||||||||||| |||||| |||| |||||| | || Sbjct 279249 CGTGAAGTAATTGACTCACGTGGTAACCCAACTGTTGAAGCTGAAG--TACACT-TAGCT 279305 Query 1756 GGTGCAT---TCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAAGCA 1812 |||| || | ||| | ||| || || ||||| || ||||| || || |||||| Sbjct 279306 GGTGGATATGTTGGTATGGCTATTGTCCCATCAGGTGCTTCAACAGGCTCACGTGAAGCA 279365 Query 1813 GTAGAACTTCGTGATGGTGACAAAGCTCGTT 1843 ||||| | ||||||||||| ||| | |||| Sbjct 279366 TTAGAATTGCGTGATGGTGATAAATCACGTT 279396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156028099417596