Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq911 91.5 2e-13 seq1913 87.8 3e-12 >seq911 Length=74078 Score = 91.5 bits (100), Expect = 2e-13 Identities = 219/329 (67%), Gaps = 2/329 (1%) Strand=Plus/Minus Query 196779 TGTCTTGTCAGCTGTATCAGCGTAG-TGCGGATATGTTCCTCGGTGTACCGTTCAACATC 196837 ||||||| ||||| ||||||||| |||| || |||| | || |||| || || || Sbjct 47007 TGTCTTGCCAGCTTTATCAGCGTTCATGCG-ATGTGTTTTTAGGCCTACCTTTTAATATT 46949 Query 196838 GCGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAG 196897 || ||||| ||| | | || ||| | ||||| || | | ||| ||||| Sbjct 46948 GCTAGCTACGCTTTGTTAGTACATATGATAGCGCAGCAATGTGATTTGGCGGTAGGCGAT 46889 Query 196898 TTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAA 196957 || ||||||||||| ||||| ||| | || |||| || |||||||| | | | Sbjct 46888 TTTGTTTGGACTGGTGGTGATACCCATCTTTATGCCAACCATATGGAACAAACACATTTA 46829 Query 196958 CAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGT 197017 || || ||||| || || | || | | | || || || |||||||| | Sbjct 46828 CAATTGAGTCGTACGCCACGCGCACTCCCTAAGTTAGTGATTAAGCGCAAACCAAATTCG 46769 Query 197018 ATCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATT 197077 || || |||||| || |||||||| || | | | ||| |||||| |||| || ||| Sbjct 46768 ATTTTTGATTACTGTTTTGAAGACTTTGAGATCGAGGACTATGATCCGTATCCTGCCATT 46709 Query 197078 AAAGCCCCGGTGGCTATTTAAGGAGACCC 197106 || || ||||| || |||||| ||||| Sbjct 46708 AAGGCACCGGTAGCGATTTAAATCGACCC 46680 >seq1913 Length=212763 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 124 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGCCCCGT 183 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 184 CCGTTCCGCCA 194 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 125446 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGCCCCGT 125505 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 125506 CCGTTCCGCCA 125516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771488787447480