Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq1913 134 4e-27 >seq1913 Length=212763 Score = 134 bits (148), Expect = 4e-27 Identities = 180/248 (73%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 33681 ACCTTCAAAATAAACTTGTGAGCC-TTTCCTAAGATACTCACCAGCAATTTCAGCGAGCT 33739 |||||||| |||||||||||| || | |||| || |||||||||||||| || | Sbjct 142414 ACCTTCAATATAAACTTGTGAACCACGGCGTAAG-TATTCACCAGCAATTTCTGCTAATC 142472 Query 33740 TGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTAT 33799 ||||| ||||| ||||||||||||||||| | || || ||| || || ||||| Sbjct 142473 GACCAAAAATAACAACGCGGTGCCATTCAGTGCGTTCTTTCGGCTCGCCGGTTTGCTTAT 142532 Query 33800 CATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGT 33859 | ||||| | ||||| || |||||| | | ||| || ||||| ||||| || | | Sbjct 142533 CTTTCCACGTCTCCGACGTCGCAACACTAATGGTGGTCACTGCGCCACCATTCGGTAAAT 142592 Query 33860 ATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTACGCCGCGAG 33919 | ||||||||||| || || ||||| | || | | || |||||||| | || ||| Sbjct 142593 AACGCACTTCTGGATCTTGTCCTAAATTACCCACTAGAATAACTTTATTAATACCACGAC 142652 Query 33920 TTGCCATT 33927 | |||||| Sbjct 142653 TGGCCATT 142660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144963229892432