Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq916 250 1e-61 >seq916 Length=289624 Score = 250 bits (276), Expect = 1e-61 Identities = 770/1184 (65%), Gaps = 33/1184 (3%) Strand=Plus/Minus Query 6748 TGAAATGAATGATTCCAGCGGTCGCTGGAGTTATGTCCGGCAGTTGTATGGTCACGTTTA 6807 ||||||| |||| | | || |||||||||||| ||| ||||| |||||||| | || Sbjct 141634 TGAAATGGATGACACAACAGGGCGCTGGAGTTATACCCGTCAGTTATATGGTCATGCCTA 141575 Query 6808 TACGGCGAAGACGGGGACTCTGTCGGAGCTTGTGGCCGCGGGTGACCAGTTTAACCTGCA 6867 ||| ||||| | || | | || || || || | ||||| | || || || Sbjct 141574 TACCGCGAAAAAAGGCGATTTATCCGAACTAGTAGAATTTGGTGATAAATTAAATTACCA 141515 Query 6868 GCACATCACCCTGGCGGGCTATGAGAAAGACACCCAGACGCCTGCTGATGAACTGGCTGC 6927 || || || | || || ||||| ||| || || || | ||||||| | | ||| Sbjct 141514 ACATATTACGGTTGCTGGTTATGAAAAAACCATTCAAACAAGTATTGATGAATTAGTTGC 141455 Query 6928 AAGCCGTACTGCCCGTGCTGCGGTTTTTATCCGTAACGATCCGGCGCGCCCGACCCAGAC 6987 || || || || || |||| ||||||| ||||||||||| || ||||| ||||| || Sbjct 141454 AATGCGAACAGCGCGGAATGCGATTTTTATTCGTAACGATCCAGCTCGCCCAACCCAAAC 141395 Query 6988 CGGGG----AACTGGTGGACATGCTGCCGGCACCGAAAGGCAAACGCTTCACACGA-CTG 7042 || || ||| | ||| | || ||| | | | ||| || || | | | | Sbjct 141394 GGGATTATTAAATGGGG--CAT--TACCCGCATCTGATAGTGAACAATTTACCCTAACAG 141339 Query 7043 AACAGCAGACGTTACTTTCCCACGGTGTGGCAACGGCGTATGTGGAAAGCGGCGTGCTGC 7102 | || || | |||||| ||||| | || || | || || |||||| | Sbjct 141338 AGCAACAATCCTTACTTAGTCACGGCATAGCCACCACCTACGTTTCAAGCGGTAATTTAT 141279 Query 7103 GTATTCAGCGGGATATCACGACGTA-CA--GGAAAAATGCGTATGGTGTGGCGGATAACA 7159 || || || |||||||| || || || | || | | |||||| | || ||||| | Sbjct 141278 TGATACAACGTGATATCACAACTTATCAACGTAACAGT---TATGGTATCGCTGATAATA 141222 Query 7160 GCTACCTTGACAGCGAGACGCTGCATACCAGTGCTTATGTGTTGCGCCGTCTGAAATCTG 7219 | || | || || || || || ||||| |||||||| || || | || Sbjct 141221 GTTATTTGGATAGTGAAACACTTCATACGCTGGCTTATGTTTTACGTAAATTACGTAGTG 141162 Query 7220 TTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTCTG 7279 | ||||| |||||| || |||||||| || |||||||| ||||| || || | | Sbjct 141161 TGATTACATCAAAATACCCACGGCATAAACTGGCCAATGATGGCACGCGATTTGGTGCAG 141102 Query 7280 GTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAG-CTGGGATCAACA-----TATC 7333 | ||||| ||| |||| ||||||||| | | || ||| |||||| |||| Sbjct 141101 GACAGGCAATTATCACACCTGCCGTT------GCTAAGGCTGAAATCAACGCCACCTATC 141048 Query 7334 GCCAGATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAG 7393 | || | || ||||| | || ||||| || || |||||| | | | | || | Sbjct 141047 GACAATTAGAATTACAAGGCTTGGTAGAAAATTTTGAACTGTTCAAAAAGAACTTAATTG 140988 Query 7394 TTGAGCGTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCA 7453 |||| || ||| ||| || | || || | ||||| | || || || |||| || | Sbjct 140987 TTGAACGAAACATCAACGATCCAAATCGATTAGATGTTTTATTCCCACCAGATTTAGTTA 140928 Query 7454 ATCAGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTACAGCGAGGAGGCTG 7513 |||| |||||||| ||||| ||||| ||||| | |||| || |||||| Sbjct 140927 ATCAATTACGTGTTTTTGCTGTGCTAGCACAGTTTAGATTGCAATATCCAGAGGAGAAAA 140868 Query 7514 CATAATGGGAAAA------ATTGCGGGAACAACGTATTTCAAAATCGACGGACAGCAACT 7567 ||||| |||| ||||| |||||||| || | ||| |||| | | ||||| Sbjct 140867 ACTAATGACAAAACGACGTATTGCAGGAACAACTTACATTAAAGTCGATGCTAACCAACT 140808 Query 7568 GTCGGTAACCGGAGGGATTGAAGTCCCCATGAACACCAAAGTTCGTGACGACGTGATTGG 7627 ||| | || || || ||||||||||| ||||| || || ||| || | ||||| Sbjct 140807 GTCACTTACAGGCGGTATTGAAGTCCCGATGAATACGAATGTTAAAGAGAGTATTATTGG 140748 Query 7628 CCTGGATGGTTCCGTTGACTACAAGGAAACCAGCCGGGCACCGTATACGAAGGTGACCGC 7687 | ||| | |||| |||| || ||||| ||| ||||| |||| || | || Sbjct 140747 GTTAGATAATAGCGTTCACTATAAAGAAACATTCCGTGCACCCTATATTAAAGGCACGTT 140688 Query 7688 CAAAGTGCCGAAAAACTTCCCGGTCGATAAAATTACGTCTTCTGATGTCATGACAATCAC 7747 ||||| ||| | || ||| |||| ||| | | ||| ||| |||||| || || Sbjct 140687 TAAAGTACCGGGTGATTTTCCGATCGACAAACTGATGTCCAGTGACAACATGACCATTAC 140628 Query 7748 ATCAGAGCTGGCAAATGGTCAGGTGTATGTTCTCTCAAACGCCTGGCTGCACGGCGAAGC 7807 |||| | || |||||| | || || || | ||||| || ||| || | || |||| Sbjct 140627 CGCAGAATTAGCTAATGGTAAAGTTTACGTGTTATCAAATGCATGGGTGGAAGGTGAAGT 140568 Query 7808 CAACCATAACCCGGAAGAGGGCACCGTGGATCTTGAGTTCCACGGTGAGGAGGGATTTTA 7867 ||| || || | ||||| || || | || |||||||| || ||||| || |||||||| Sbjct 140567 CAATCACAATGCAGAAGAAGGTACAGCTGAACTTGAGTTTCATGGTGAAGAAGGATTTTA 140508 Query 7868 CCAGTGATAAAAGAACTTGTGCTCAAAAAGCCGATTATGGCGCA 7911 || | || |||||| || | | ||||||| ||||| || Sbjct 140507 TCAATAATGAAAGAAATTAAATTATCACAGCCGATCATGGCACA 140464 Score = 248 bits (274), Expect = 4e-61 Identities = 769/1184 (65%), Gaps = 32/1184 (3%) Strand=Plus/Minus Query 46336 TGAAATGAATGATTCCAGCGGTCGCTGGAGTTATGTCCGGCAGTTGTATGGTCACGTTTA 46395 ||||||| |||| | | || |||||||||||| ||| ||||| |||||||| | || Sbjct 141634 TGAAATGGATGACACAACAGGGCGCTGGAGTTATACCCGTCAGTTATATGGTCATGCCTA 141575 Query 46396 TACGGCGAAGACGGGGACTCTGTCGGAGCTTGTGGCCGCGGGTGACCAGTTTAACCTGCA 46455 ||| ||||| | || | | || || || || | ||||| | || || || Sbjct 141574 TACCGCGAAAAAAGGCGATTTATCCGAACTAGTAGAATTTGGTGATAAATTAAATTACCA 141515 Query 46456 GCACATCACCCTGGCGGGCTATGAGAAAGACACCCAGACGCCTGCTGATGAACTGGCTGC 46515 || || || | || || ||||| ||| || || || | ||||||| | | ||| Sbjct 141514 ACATATTACGGTTGCTGGTTATGAAAAAACCATTCAAACAAGTATTGATGAATTAGTTGC 141455 Query 46516 AAGCCGTACTGCCCGTGCTGCGGTTTTTATCCGTAACGATCCGGCGCGCCCGACCCAGAC 46575 || || || || || |||| ||||||| ||||||||||| || ||||| ||||| || Sbjct 141454 AATGCGAACAGCGCGGAATGCGATTTTTATTCGTAACGATCCAGCTCGCCCAACCCAAAC 141395 Query 46576 CGGGG----AACTGGTGGACATGCTGCCGGCACCGAAAGGCAAACGCTTCACGACGACTG 46631 || || ||| | ||| | || ||| | | | ||| || || || | Sbjct 141394 GGGATTATTAAATGGGG--CAT--TACCCGCATCTGATAGTGAACAATTTACCCTAACAG 141339 Query 46632 AACAGCAGACGTTACTTTCCCACGGTGTGGCAACGGCGTATGTGGAAAGCGGCGTGCTGC 46691 | || || | |||||| ||||| | || || | || || |||||| | Sbjct 141338 AGCAACAATCCTTACTTAGTCACGGCATAGCCACCACCTACGTTTCAAGCGGTAATTTAT 141279 Query 46692 GTATTCAGCGGGATATCACGACGTA-CA--GGAAAAATGCGTATGGTGTGGCGGATAACA 46748 || || || |||||||| || || || | || | | |||||| | || ||||| | Sbjct 141278 TGATACAACGTGATATCACAACTTATCAACGTAACAGT---TATGGTATCGCTGATAATA 141222 Query 46749 GCTACCTTGACAGCGAGACGCTGCATACCAGTGCTTATGTGTTGCGCCGTCTGAAATCTG 46808 | || | || || || || || ||||| |||||||| || || | || Sbjct 141221 GTTATTTGGATAGTGAAACACTTCATACGCTGGCTTATGTTTTACGTAAATTACGTAGTG 141162 Query 46809 TTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTCTG 46868 | ||||| |||||| || |||||||| || |||||||| ||||| || || | | Sbjct 141161 TGATTACATCAAAATACCCACGGCATAAACTGGCCAATGATGGCACGCGATTTGGTGCAG 141102 Query 46869 GTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAG-CTGGGATCAACA-----TATC 46922 | ||||| ||| |||| ||||||||| | | || ||| |||||| |||| Sbjct 141101 GACAGGCAATTATCACACCTGCCGTT------GCTAAGGCTGAAATCAACGCCACCTATC 141048 Query 46923 GCCAGATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAG 46982 | || | || ||||| | || ||||| || || |||||| | | | | || | Sbjct 141047 GACAATTAGAATTACAAGGCTTGGTAGAAAATTTTGAACTGTTCAAAAAGAACTTAATTG 140988 Query 46983 TTGAGCGTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCA 47042 |||| || ||| ||| || | || || | ||||| | || || || |||| || | Sbjct 140987 TTGAACGAAACATCAACGATCCAAATCGATTAGATGTTTTATTCCCACCAGATTTAGTTA 140928 Query 47043 ATCAGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTACAGCGAGGAGGCTG 47102 |||| |||||||| ||||| ||||| ||||| | |||| || |||||| Sbjct 140927 ATCAATTACGTGTTTTTGCTGTGCTAGCACAGTTTAGATTGCAATATCCAGAGGAGAAAA 140868 Query 47103 CATAATGGGAAAA------ATTGCGGGAACAACGTATTTCAAAATCGACGGACAGCAACT 47156 ||||| |||| ||||| |||||||| || | ||| |||| | | ||||| Sbjct 140867 ACTAATGACAAAACGACGTATTGCAGGAACAACTTACATTAAAGTCGATGCTAACCAACT 140808 Query 47157 GTCGGTAACCGGAGGGATTGAAGTCCCCATGAACACCAAAGTTCGTGACGACGTGATTGG 47216 ||| | || || || ||||||||||| ||||| || || ||| || | ||||| Sbjct 140807 GTCACTTACAGGCGGTATTGAAGTCCCGATGAATACGAATGTTAAAGAGAGTATTATTGG 140748 Query 47217 CCTGGATGGTTCCGTTGACTACAAGGAAACCAGCCGGGCACCGTATACGAAGGTGACCGC 47276 | ||| | |||| |||| || ||||| ||| ||||| |||| || | || Sbjct 140747 GTTAGATAATAGCGTTCACTATAAAGAAACATTCCGTGCACCCTATATTAAAGGCACGTT 140688 Query 47277 CAAAGTGCCGAAAAACTTCCCGGTCGATAAAATTACGTCTTCTGATGTCATGACAATCAC 47336 ||||| ||| | || ||| |||| ||| | | ||| ||| |||||| || || Sbjct 140687 TAAAGTACCGGGTGATTTTCCGATCGACAAACTGATGTCCAGTGACAACATGACCATTAC 140628 Query 47337 ATCAGAGCTGGCAAATGGTCAGGTGTATGTTCTCTCAAACGCCTGGCTGCACGGCGAAGC 47396 |||| | || |||||| | || || || | ||||| || ||| || | || |||| Sbjct 140627 CGCAGAATTAGCTAATGGTAAAGTTTACGTGTTATCAAATGCATGGGTGGAAGGTGAAGT 140568 Query 47397 CAACCATAACCCGGAAGAGGGCACCGTGGATCTTGAGTTCCACGGTGAGGAGGGATTTTA 47456 ||| || || | ||||| || || | || |||||||| || ||||| || |||||||| Sbjct 140567 CAATCACAATGCAGAAGAAGGTACAGCTGAACTTGAGTTTCATGGTGAAGAAGGATTTTA 140508 Query 47457 CCAGTGATAAAAGAACTTGTGCTCAAAAAGCCGATTATGGCGCA 47500 || | || |||||| || | | ||||||| ||||| || Sbjct 140507 TCAATAATGAAAGAAATTAAATTATCACAGCCGATCATGGCACA 140464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247458433477864