Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_033778.1 Length=111453 Score E Sequences producing significant alignments: (Bits) Value seq647 113 3e-20 >seq647 Length=2209093 Score = 113 bits (124), Expect = 3e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 26370 TGATGATGGTAGAATATGTAAAATTTGTTATAATGAAGAAATCGGTGTTGTATTTTTACC 26429 |||||||| ||||| || ||||| |||||||| | |||| | || || ||||||||||| Sbjct 1060589 TGATGATGCAAGAATGTGCAAAATCTGTTATAACGGAGAATTAGGAGTGGTATTTTTACC 1060530 Query 26430 GTGTGGTCATATTGTAGCATGTATTAAATGTGCACCCGGAATGATGAATTGTCCAGTCTG 26489 ||||| ||||| || || ||| | |||||||| || || |||| | |||| |||| || Sbjct 1060529 ATGTGGACATATGGTTGCTTGTGTAAAATGTGCTCCTGGCATGACAACTTGTGCAGTATG 1060470 Query 26490 TCGTAAACCAGTCAGCATGAATATACGAACATTCTTTTCATA 26531 | | |||| || | |||| | ||||| | ||| | |||| Sbjct 1060469 TAGAGAACCTGTTACGATGACTGTACGAGCTTTCATCCCATA 1060428 Score = 113 bits (124), Expect = 3e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 26370 TGATGATGGTAGAATATGTAAAATTTGTTATAATGAAGAAATCGGTGTTGTATTTTTACC 26429 |||||||| ||||| || ||||| |||||||| |||||| | || || ||||||||||| Sbjct 1071973 TGATGATGCAAGAATGTGCAAAATCTGTTATAACGAAGAATTAGGAGTGGTATTTTTACC 1071914 Query 26430 GTGTGGTCATATTGTAGCATGTATTAAATGTGCACCCGGAATGATGAATTGTCCAGTCTG 26489 ||||| ||||| |||| ||| | |||||||| | || ||||||| |||| |||| || Sbjct 1071913 ATGTGGACATATGATAGCTTGTGTAAAATGTGCTCTTGGCATGATGATTTGTGCAGTATG 1071854 Query 26490 TCGTAAACCAGTCAGCATGAATATACGAACATTCTTTTCATA 26531 | |||| || | |||| | || || | ||| | |||| Sbjct 1071853 CAGAGAACCTGTTACAATGACTGTAAGAGCCTTCATCCCATA 1071812 Score = 105 bits (116), Expect = 5e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 25598 TTGCAAAAGCTGGATTGTATTATATTGGTGAAAATGATAGTGTTAAATGTTTTGAATGTA 25657 ||||| || ||||| ||||||| ||||||| ||| || || ||||||||||||||| Sbjct 1061551 TTGCAGCTGCAGGATTCTATTATACGGGTGAAAGTGACAGAGTAAAATGTTTTGAATGTG 1061492 Query 25658 ACGTTACTATTATG-AAATGGGAAGAAGATGATGAACCTTTAGCATGTCATAAAAGATGG 25716 | ||| || ||| ||||||| ||||| |||| ||| | | |||| | |||||| Sbjct 1061491 AAGTTGAGAT-ATGTAAATGGGTAGAAGGTGATATACCCATGGTCGATCATCAGAGATGG 1061433 Query 25717 TCTGCAAGATGTCGATTTATTAGAAAAATTGCTTGTGGAAATGTTCCAATAGGTATTGAT 25776 |||||||| ||| |||||||| | ||| | ||||| ||| | || || || | ||| Sbjct 1061432 TCTGCAAGGTGTAGATTTATTCGTAAACTGAACTGTGGTAATATACCCATTGGAGTAGAT 1061373 Query 25777 CC 25778 || Sbjct 1061372 CC 1061371 Score = 100 bits (110), Expect = 2e-16 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 25598 TTGCAAAAGCTGGATTGTATTATATTGGTGAAAATGATAGTGTTAAATGTTTTGAATGTA 25657 ||||| || ||||| ||||||| ||||||| ||| || || ||||||||||||||| Sbjct 1072935 TTGCAGCTGCAGGATTCTATTATACGGGTGAAAGTGACAGAGTAAAATGTTTTGAATGTG 1072876 Query 25658 ACGTTACTATTATG-AAATGGGAAGAAGATGATGAACCTTTAGCATGTCATAAAAGATGG 25716 ||| || ||| ||||||| ||||| |||| ||| | | |||| | |||||| Sbjct 1072875 GAGTTGAGAT-ATGTAAATGGGTAGAAGGTGATATACCCATGGTCGATCATCAGAGATGG 1072817 Query 25717 TCTGCAAGATGTCGATTTATTAGAAAAATTGCTTGTGGAAATGTTCCAATAGGTATTGAT 25776 |||||||| ||| |||||||| | ||| | ||||| ||| | || || || | ||| Sbjct 1072816 TCTGCAAGGTGTAGATTTATTCGTAAACTGAACTGTGGTAATATACCCATTGGAGTAGAT 1072757 Query 25777 CC 25778 || Sbjct 1072756 CC 1072755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356500645333386