Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2985 226 5e-57 >seq2985 Length=1020 Score = 226 bits (250), Expect = 5e-57 Identities = 206/255 (81%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| || ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 250 CTTCTTAGAGGAACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 193 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || ||| Sbjct 192 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTTTT--- 136 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 135 CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 76 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 75 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 16 Query 311 ACGTCCCTGCCCTTT 325 ||||||||||||||| Sbjct 15 ACGTCCCTGCCCTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947146871552