Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15 116 3e-21 >seq15 Length=11467329 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 61161 TGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTT 61220 ||||||| | | |||| || | ||| |||||||||| ||||| || || ||||| Sbjct 5182112 TGACTGGAATCATTTAAATAGTGATGAGAAACATTTCATATCTCATGTCTTAGCATTCTT 5182171 Query 61221 TGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCA 61280 ||| ||||| || || ||||| |||||||| | | ||||| || || || || || Sbjct 5182172 TGCGGCTTCTGATGGAATCGTTAATGAGAACCTCGTCGAACGATTTAGTCAAGAAGTACA 5182231 Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGA 61340 ||| | ||||| ||||||||||| || || || | ||||| || ||||| ||||| || Sbjct 5182232 AGTAACCGAGGCACGTTGTTTCTATGGTTTTCAAGTCGCCATAGAAAATGTGCACTCAGA 5182291 Query 61341 GATGTACAGTGTTCTCATCGATACGTACATCA 61372 |||||| | | | || ||||| || |||| Sbjct 5182292 AATGTACTCTATGTTGATTGATACATATATCA 5182323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397540822375760