Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_033778.1 Length=111453 Score E Sequences producing significant alignments: (Bits) Value seq1 113 3e-20 >seq1 Length=17153651 Score = 113 bits (124), Expect = 3e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 25598 TTGCAAAAGCTGGATTGTATTATATTGGTGAAAATGATAGTGTTAAATGTTTTGAATGTA 25657 ||||| || ||||| ||||||| |||||||| ||| | || ||||||||||||||| Sbjct 4480984 TTGCAGCTGCAGGATTTTATTATACTGGTGAAAGTGACAAAGTAAAATGTTTTGAATGTC 4481043 Query 25658 ACGTTACTATTATG-AAATGGGAAGAAGATGATGAACCTTTAGCATGTCATAAAAGATGG 25716 | ||| | |||| ||||||| ||||| |||| ||| | | |||| | |||||| Sbjct 4481044 AAGTTGAGA-TATGTAAATGGGTAGAAGGTGATATACCCATGGTCGATCATCAGAGATGG 4481102 Query 25717 TCTGCAAGATGTCGATTTATTAGAAAAATTGCTTGTGGAAATGTTCCAATAGGTATTGAT 25776 |||||||| ||| |||||||| | ||| | ||||| ||||| || || || | ||| Sbjct 4481103 TCTGCAAGGTGTAGATTTATTCGTAAACTGAACTGTGGTAATGTACCCATTGGAGTAGAT 4481162 Query 25777 CCAAATACAGT 25787 || |||| || Sbjct 4481163 CCTGATACGGT 4481173 Score = 113 bits (124), Expect = 3e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 26370 TGATGATGGTAGAATATGTAAAATTTGTTATAATGAAGAAATCGGTGTTGTATTTTTACC 26429 |||||||| ||||| || ||||| |||||||| | |||| | || || ||||||||||| Sbjct 4481946 TGATGATGCAAGAATGTGCAAAATCTGTTATAACGGAGAATTAGGAGTGGTATTTTTACC 4482005 Query 26430 GTGTGGTCATATTGTAGCATGTATTAAATGTGCACCCGGAATGATGAATTGTCCAGTCTG 26489 ||||| ||||| || || ||| | |||||||| || || |||| | |||| |||| || Sbjct 4482006 ATGTGGACATATGGTTGCTTGTGTAAAATGTGCCCCTGGCATGACAACTTGTGCAGTATG 4482065 Query 26490 TCGTAAACCAGTCAGCATGAATATACGAACATTCTTTTCATA 26531 | | |||| || | |||| | ||||| | ||| | |||| Sbjct 4482066 TAGAGAACCTGTTACGATGACTGTACGAGCTTTCATCCCATA 4482107 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 26371 GATGATGGTAGAATATGTAAAATTTGTTATAATGAAGAAATCGGTGTTGTATTTTTACCG 26430 ||||||| ||||| || ||||| |||||||| | |||| | || || ||||||||||| Sbjct 4469831 GATGATGCAAGAATGTGCAAAATCTGTTATAACGGAGAATTAGGAGTGGTATTTTTACCA 4469890 Query 26431 TGTGGTCATATTGTAGCATGTATTAAATGTGCACCCGGAATGATGAATTGTCCAGTCTGT 26490 ||||| ||||| || || ||| | |||||||| || || ||||||| |||| |||| || Sbjct 4469891 TGTGGACATATAGTTGCCTGTGTAAAATGTGCTCCTGGCATGATGATTTGTGCAGTATGC 4469950 Query 26491 CGTAAACCAGTCAGCATGAATATACGAACATTCTTTTCATA 26531 | ||| || | |||| | ||||| | ||| | |||| Sbjct 4469951 AGAGGACCTGTTACAATGACTGTACGAGCCTTCATCCCATA 4469991 Score = 109 bits (120), Expect = 4e-19 Identities = 159/222 (72%), Gaps = 11/222 (5%) Strand=Plus/Plus Query 25606 GCTGGATTGTATTATATTGGTGAAAATGATAGTGTTAAATGTTTTGAATGTAACGTTACT 25665 || ||||| ||||||| ||||||| ||| || || |||||||| |||||| | ||| Sbjct 4468876 GCAGGATTCTATTATACGGGTGAAAGTGACAGAGTAAAATGTTTCGAATGTCAAGTTGAG 4468935 Query 25666 ATTATG-AAATGGGAAGAAGATGATGAACCTTTAGCATGTCATAAAAGATGGTCTGCAAG 25724 || ||| ||||||| ||||| |||| ||| | | |||| | |||||||||||||| Sbjct 4468936 AT-ATGTAAATGGGTAGAAGGTGATATACCCATGGTCGATCATCAGAGATGGTCTGCAAG 4468994 Query 25725 ATGTCGATTTATTAGAAAAATTGCTTGTGGAAATGTTCCAATAGGTATTGATCCAAATAC 25784 ||| |||||||| | ||| | ||||| ||||| || || || | ||||| | ||| Sbjct 4468995 GTGTAGATTTATTCGTAAACTGAACTGTGGTAATGTACCCATTGGAGTAGATCCCAGTAC 4469054 Query 25785 AGT------ACCAATTCCTAAAAGGAGTTATGATGTATGTGG 25820 || ||||| || ||| ||| ||||||||||| Sbjct 4469055 GGTGGTACGACCAAGACC---AAGAAGTAGGGATGTATGTGG 4469093 Score = 87.8 bits (96), Expect = 1e-12 Identities = 173/256 (68%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 25994 ATCCAAATTATTCTACAAATGAATCAAGATTAATAACATTTGAAACATGGCCAAAAGCAA 26053 ||||| | ||| ||| |||| | || ||| ||||||| ||||||||| ||| | | Sbjct 4481335 ATCCAGAATATGCTAGTTATGATGCTAGGTTACACACATTTGTAACATGGCCTAAATCTA 4481394 Query 26054 TGATGCGAATTAAAGAACAACTTTCAAATGCGGGttttttttATTCAGGAAATGGAGATA 26113 || | || ||||||||| | | |||| || ||||||||| | || || || || Sbjct 4481395 TGCCACAAACAAAAGAACAATTAGCCGATGCAGGCTTTTTTTATACTGGGAAAGGTGACC 4481454 Query 26114 AAGTATTATGTTATCAATGTGGTGGTTCTATAAATAATTTTGAATTACATGACGATCCAT 26173 || | ||||| || ||||| ||| | |||| ||| ||| | | || ||||| | Sbjct 4481455 AAACCCTGTGTTACCACTGTGGAGGTGGTTTAAAAGATTGGGAACCAGAAGATGATCCTT 4481514 Query 26174 GGATACGACATGCAAAAGAATATCCAAATTGTTTATATGTATTTCTTGTTAAAGGACAAG 26233 || || ||| ||||| | | | || || | ||| |||| | || |||| |||| Sbjct 4481515 GGGAACAACACGCAAAGTGGTTTTCTAAATGCTGTTATTTATTAATGGTGCAAGGGCAAG 4481574 Query 26234 ATTATATAAATAGAAT 26249 ||||||| | || ||| Sbjct 4481575 ATTATATTAGTAAAAT 4481590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356500428076086