Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19]
672,913 sequences; 450,338,996 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq1503 297 6e-78
seq112763 251 2e-64
seq218752 152 2e-34
seq51479 152 2e-34
seq666065 118 3e-24
seq446387 91.5 5e-16
>seq1503
Length=1697
Score = 297 bits (328), Expect = 6e-78
Identities = 178/187 (95%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCCTCAC 60
Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466
|||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TAATTAGATGACAAGGAATTTGGGTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 120
Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526
||||||||| |||||||||||||| |||| |||||||||||| ||||||||||||||| |
Sbjct 121 CCGCGCTTGCTTGAATTTCTTCACGTTGATATTCAGAGCACTAGGCAGAAATCACATTAC 180
Query 527 GTCAACA 533
|||||||
Sbjct 181 GTCAACA 187
>seq112763
Length=1357
Score = 251 bits (278), Expect = 2e-64
Identities = 142/144 (99%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TTCTTTCCCCGCTGATTCTCCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 666
Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 726
Query 424 ATTTGGCTACCTTAAGAGAGTCAT 447
||||||||||||||||||||||||
Sbjct 727 ATTTGGCTACCTTAAGAGAGTCAT 750
>seq218752
Length=365
Score = 152 bits (168), Expect = 2e-34
Identities = 89/92 (97%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct 365 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGTCATT 306
Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
||||||||||||||||||||||||||||||||
Sbjct 305 CAGAGCACTGGGCAGAAATCACATTGCGTCAA 274
>seq51479
Length=555
Score = 152 bits (168), Expect = 2e-34
Identities = 132/161 (82%), Gaps = 6/161 (4%)
Strand=Plus/Plus
Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCA----CTTGCGC-CGAAACGG-CT 238
|| ||||||| |||| || | |||||||| ||||| | ||| ||||||| ||
Sbjct 145 GAGTAAGTAATGAAACAATGAAAGTAGTGGTTTTTCAGCGACGATCGCGCGAAACGATCT 204
Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298
||||||||| |||||||||||| ||| | |||| | | ||||||||||||||||||||
Sbjct 205 CCCACTTATGCTACACCTCTCATGTCTCCTTACAATGCCAGACTAGAGTCAAGCTCAACA 264
Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 339
||||||||||||||||||||||| ||||||||||||||||
Sbjct 265 GGGTCTTCTTTCCCCGCTGATTCTCCCAAGCCCGTTCCCTT 305
>seq666065
Length=1164
Score = 118 bits (130), Expect = 3e-24
Identities = 67/68 (99%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 400 GCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1164 GCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTTCCGC 1105
Query 460 CGTTTACC 467
||||||||
Sbjct 1104 CGTTTACC 1097
>seq446387
Length=280
Score = 91.5 bits (100), Expect = 5e-16
Identities = 53/55 (96%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 226 TCTTTCCCCGCTGATTCTCCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1624196526624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |