Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq237220 199 3e-46 seq601675 129 5e-25 seq562919 95.1 1e-14 >seq237220 Length=3575 Score = 199 bits (220), Expect = 3e-46 Identities = 1132/1799 (63%), Gaps = 43/1799 (2%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || || ||||| || ||||| || || | || || | | ||| ||||| || || Sbjct 2469 ATCTACAGTAAACTGTATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACATCCCTGT 2410 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || | || ||| | ||| ||||| || || | ||| || | ||||||||||| Sbjct 2409 TTTTAAACCCATTTTCCATGAATAAAAATGAATAGAAGTTAACTTCCCGTAATTCGGCTC 2350 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || ||||| ||||| || || ||||| ||||| || || |||||||| |||||||| Sbjct 2349 AGCAACATGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCCAT 2290 Query 65257 GTCAAT----GATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCT 65312 | || | | ||| || || ||||| || ||||| || | | |||| | Sbjct 2289 TTGTATTGTTGTTTTGACT----GAAATTTCCCAAACTGTCTTATATAAGTCTCGTATTT 2234 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGAC-GTGCAATAATGCGATTACGC 65371 | | || || || || | || | || ||| | ||| | ||||| |||| | Sbjct 2233 CTGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTA-TAATGAGATTTTTC 2175 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACT 65431 || ||| ||| ||| | || | |||| ||| ||| || |||| | ||| Sbjct 2174 ATTTCCTCATCCCATAAATCTGCTTCTGTCAGATCACGAAGCAAATGGTGATTTACAACT 2115 Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 || || || || || | ||||| | ||| || || || |||| |||||||| ||| Sbjct 2114 TGAAATTCTCCAGATAAAACACGTCTTTGATAAATATTAGAAGTGAAAGGTTCAAAAGAT 2055 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 ||| | || |||| ||| ||||| || || ||||| ||||| || || | ||| | || Sbjct 2054 TCATTATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAAAGAGAA 1995 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTT 65609 || || | || | | | ||||||| | || ||||| ||| | || ||| Sbjct 1994 TTGCGAAGGCCATGCTTAGCAATGTTTTTTTTTAAAGAAGTCCAGTCCCATAAATCTGTT 1935 Query 65610 TATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAAC 65669 || | | |||||| || | || | | || | ||| || || | Sbjct 1934 G------GATTTTTATT--CCACATTTCGTACTGTAATATACCTAGACTTGCAGGGCTCC 1883 Query 65670 CGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGG 65729 | | | | ||||||||||| | || | || | || ||| || | || | ||| Sbjct 1882 CTTCGTATGTTTCGTACACTCCATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTC 1823 Query 65730 CAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACG 65789 || | ||||| || || || || || |||| |||| | || || || ||||| | Sbjct 1822 CATAGTAAATAGTTTCAAATATTTGTTGATTTAGTTTAATAGCTTCTGGACTTTCGTAAG 1763 Query 65790 GCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGAT 65849 | | || ||| | | ||||| || || ||||||||||| || || || || || |||| Sbjct 1762 GTAAACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGAT 1703 Query 65850 GACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGAT 65909 | | |||||||| | | || || || ||||| || ||||| | || || || || Sbjct 1702 GCCTAAAATTGGATTTTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGATTTTAT 1643 Query 65910 TCAAATTGCGTGTCACCACATGCACGATACGTCGC--AATTGTTCGAAATCAAAATGTTT 65967 ||||||| ||| || | | | | || || |||| | |||| | | ||||| Sbjct 1642 TCAAATTTTCTGTTAC-AGTTTTAGTA-ACTTCTTTTAATTTCGCAAAATTATA-TGTTT 1586 Query 65968 AGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCA 66027 | ||| | |||||| | ||||||| ||| || | |||||| Sbjct 1585 TGTT--ATCATTA------------ACAAACATATTTAGGGCAATAGAAGCTAAGTTGCA 1540 Query 66028 GACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCG 66087 || || | || ||| || ||| | || || ||||| |||||||| ||||| || Sbjct 1539 TACTGCCACTTCATCATCAGATGTAAATTCTACTATTTCAGTGCACAGGTTACTACATTT 1480 Query 66088 TATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTA 66147 ||||| || ||||| | |||||||| || | ||| |||| ||| || | | |||||| Sbjct 1479 AATGGTACCTAAATTTTTCTGATTACTTTTTCTATTACATGAATCTTTAAATAACATGTA 1420 Query 66148 CGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC 66207 ||||| || ||||| ||||| | || || || || | |||||| | |||| | || Sbjct 1419 TGGAGTACCAGTCTCTACTTGAGCTTCTATTATTGCTTTCCAAAGTACTTGTGCTCTTAC 1360 Query 66208 CGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACC 66267 | ||| || ||| || ||| || | | ||| || || || Sbjct 1359 TTGTTTAATAAATCTATTTTCTTTTTCATAGGTTTCATATAAGGATTCAAATTCTTTTCC 1300 Query 66268 CCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTG 66327 ||| || | | | || || | ||| |||||||| || | ||| | ||||| | Sbjct 1299 CCAACAGTCAGCTAACCCAGGGCAATCGTGAGGACACATAAGGGTCCATACGCCATCATT 1240 Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 ||| || | ||| || |||||||||||||| | || || || || || | || || Sbjct 1239 TTCAACTCTTTTCATGAAAAGATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACG 1180 Query 66388 TTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCC 66446 | || || | || ||| ||||| || || | ||| ||||| || |||||||||| Sbjct 1179 TACTTCTTCTTTTCCAGTG-TTTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCC 1121 Query 66447 ATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 ||||||| | |||| || || | || || || || ||||| || || || | Sbjct 1120 ATGGTTCTAAATAGACTGCAAAAGCACCAGGGCGCTTATTACCTCCTTGATCAACATATC 1061 Query 66507 GAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGC 66566 ||| ||| ||| | || || ||||| ||||| || || || || ||||| || | Sbjct 1060 TAGCTGTATTATTGTAAACTCGTAACATTGGTACAAGACCATTTGACACACCATTTGTTC 1001 Query 66567 CGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCG 66626 | | || | ||| |||| |||| ||| |||| | |||||| ||||| || | Sbjct 1000 CTGCTATATAAGTACCTTTAGCCCTTATACAGTGGACATGGACACCAATTCCACCTGCAG 941 Query 66627 TCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCT 66686 || || || |||||| | | || | | || || || ||| ||| | | Sbjct 940 ATTTAGATATCAAAGCACACTGCTTTAAGGTATCGTAAATCCCTTCTATGCTATCATCTT 881 Query 66687 TGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGG 66746 | || | | || | ||||| || || || || || || || ||||| | || Sbjct 880 TCATAGCTATTAGAAAACATGACGATAGCTGAGGGCGTGGAGTTGCAGCGGAGAATAAGG 821 Query 66747 TGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCAT 66806 | || | || || || || || | ||| | |||| || || | ||| | |||| Sbjct 820 TAGGGCTGGCATGAGTGAAATATTTCTCAGAAAGTAAATTATATGTATTTATGGCTGCAT 761 Query 66807 CAATGTTTTCGCCATGAATCCCGAGTGCACA-TCGCATCAGGAGGTATTGAGGCCGTTC 66864 |||| | ||| |||||||| || | || ||| || ||||| | | |||||| ||||| Sbjct 760 CAATATCTTCACCATGAATTCC-AATGGACACTCTCATCAACATATGTTGAGGTCGTTC 703 >seq601675 Length=487 Score = 129 bits (142), Expect = 5e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 61191 ACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAA 61250 ||| ||||| || ||||| | || |||||||| ||||| ||||| || || ||||| || Sbjct 193 ACACTTCATCAAGCATGTTCTTGCATTCTTTGCGGCTTCCGACGGCATTGTAAATGAAAA 252 Query 61251 TTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTT 61310 ||| | || | || | || || || |||||| | ||||| | |||||||| ||||| Sbjct 253 CTTAGTTGAGAGATTTTCACAAGAAGTTCAAGTGACTGAGGCAAGATGTTTCTATGGCTT 312 Query 61311 CCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||| |||||||| ||||| || || || ||||| |||| || ||||| ||||| Sbjct 313 CCAGATAGCCATGGAAAATGTTCATTCTGAAATGTATTCCCTTCTTATAGATACATACAT 372 Query 61371 CAGGGA 61376 ||| || Sbjct 373 CAGAGA 378 >seq562919 Length=404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 |||| |||||||| || || | || || ||| |||||| |||||||| | | | Sbjct 38 TGTTTAATGCCATTGAAACTCTTCCCTGTGTAAAGAAGAAAGCTGATTGGGCTCTACAGT 97 Query 61457 GGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 ||||| | || | || || |||||||||||| || | | || ||||| | || || | Sbjct 98 GGATCGCAAGCAAGACTGCAACATTTGGTGAAAGAATTGTTGCCTTTGCAGCTGTAGAAG 157 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | |||||||| || ||||| | ||||| ||| |||| || | || ||||||| Sbjct 158 GAATATTTTTCTCGGGCAGTTTTGCTTCCATCTTCTGGCTGAAAAAGAGGGGTCTTATGC 217 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 | || || || ||||| |||||| | || || | || |||| Sbjct 218 CAGGACTCACATTCAGTAATGAGCTTATTTCCAGGGATGAGG 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394307494266320