Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq37546 206 4e-51 seq1359 206 4e-51 seq419 206 4e-51 seq33844 205 1e-50 seq13612 143 4e-32 seq38352 140 5e-31 seq756 113 7e-23 >seq37546 Length=825 Score = 206 bits (228), Expect = 4e-51 Identities = 185/226 (82%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | Sbjct 112 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-C 169 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||||||| | ||||||| ||||| | | ||||| | || Sbjct 170 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAGCGGGTT 229 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| | ||||| || || || | ||| | | ||||||||||||||||||| Sbjct 230 GCCCGGGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGCG 286 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 287 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 331 >seq1359 Length=9234 Score = 206 bits (228), Expect = 4e-51 Identities = 185/226 (82%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | Sbjct 6977 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-C 6920 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||||||| | ||||||| ||||| | | ||||| | || Sbjct 6919 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAGCGGGTT 6860 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| | ||||| || || || | ||| | | ||||||||||||||||||| Sbjct 6859 GCCCGGGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGCG 6803 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 6802 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 6758 >seq419 Length=4206046 Score = 206 bits (228), Expect = 4e-51 Identities = 185/226 (82%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | Sbjct 255877 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-C 255934 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||||||| | ||||||| ||||| | | ||||| | || Sbjct 255935 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAGCGGGTT 255994 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| | ||||| || || || | ||| | | ||||||||||||||||||| Sbjct 255995 GCCCGGGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGCG 256051 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 256052 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 256096 >seq33844 Length=741 Score = 205 bits (226), Expect = 1e-50 Identities = 179/218 (82%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | Sbjct 528 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-C 585 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||||||| | ||||||| ||||| | | ||||| | || Sbjct 586 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAGCGGGTT 645 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| | ||||| || || || | ||| | | ||||||||||||||||||| Sbjct 646 GCCCGGGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGCG 702 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||| ||||||||||||||||||||||||||||||| Sbjct 703 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGC 740 >seq13612 Length=593 Score = 143 bits (158), Expect = 4e-32 Identities = 174/225 (77%), Gaps = 18/225 (8%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 255 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAA-TTC 312 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | | | |||||||| | | |||| ||||| | | |||| | | Sbjct 313 CTCGTTTATGGGGGATAATTGCAA--CCCCAATCCCAGCACGAAGGA--TTCAGCGGGTT 368 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||| ||| | | || | || || | || || | || ||||||||||||||||| Sbjct 369 GCCGGGCCTCTAG--CA--GAGA---ACATGCTG-ATCCTTC-GTGTAGCGCGCGTGCGG 419 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||| |||||||||||||||||||||| |||||| ||||| || Sbjct 420 CCCAGGACATCTAAGGGCATCACAGACC--TTATTG-CTCAATCT 461 >seq38352 Length=859 Score = 140 bits (154), Expect = 5e-31 Identities = 143/182 (79%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 45 GCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT 104 |||||||||||||| ||||||| | | | |||||||| | ||||||| ||||| Sbjct 1 GCTTACTAGGAATT-CCTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAA 59 Query 105 GAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCA 163 | | ||||| | || ||||| ||| | ||||| || || || | ||| | | ||| Sbjct 60 GGAGTTTCAGCGGGTTGCCCGGGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCA 116 Query 164 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 117 GTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAAT 175 Query 224 CT 225 || Sbjct 176 CT 177 >seq756 Length=6248677 Score = 113 bits (124), Expect = 7e-23 Identities = 109/136 (80%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 4028495 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAA-TTC 4028552 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| | | | |||||||| | ||||||| ||||| | | ||||| | || Sbjct 4028553 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAGCGGGTT 4028612 Query 120 ACCCGGACCTGTCGGC 135 ||||| ||| | ||| Sbjct 4028613 GCCCGGGCCTCTAGGC 4028628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751683372045