Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq37546 223 7e-56 seq1359 223 7e-56 seq419 212 1e-52 seq33844 210 4e-52 seq38352 161 2e-37 seq13612 158 2e-36 seq756 127 4e-27 seq460 82.4 1e-13 >seq37546 Length=825 Score = 223 bits (246), Expect = 7e-56 Identities = 207/258 (80%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | ||||| || | ||||| |||||||||||||||| Sbjct 365 CTTCTTAGAGGGACCGGCGTCTTCGAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 308 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| || || | |||| Sbjct 307 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCATGTTCT--- 251 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || ||||| ||| | ||| || | | |||||| ||||||||||||| | | ||| Sbjct 250 CCCTGGCCTAGAGGCCCGGGCAACCCGCTGAAACTCCTTCGTGCTGGGGATTGGGGTTTG 191 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| ||||||||||||| ||||| ||| |||||||||| Sbjct 190 CAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 131 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 130 ACGTCCCTGCCCTTTGTA 113 >seq1359 Length=9234 Score = 223 bits (246), Expect = 7e-56 Identities = 207/258 (80%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | ||||| || | ||||| |||||||||||||||| Sbjct 6724 CTTCTTAGAGGGACCGGCGTCTTCGAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 6781 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| || || | |||| Sbjct 6782 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCATGTTCT--- 6838 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || ||||| ||| | ||| || | | |||||| ||||||||||||| | | ||| Sbjct 6839 CCCTGGCCTAGAGGCCCGGGCAACCCGCTGAAACTCCTTCGTGCTGGGGATTGGGGTTTG 6898 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| ||||||||||||| ||||| ||| |||||||||| Sbjct 6899 CAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 6958 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 6959 ACGTCCCTGCCCTTTGTA 6976 >seq419 Length=4206046 Score = 212 bits (234), Expect = 1e-52 Identities = 182/223 (82%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 256096 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTAC 256038 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||||| || || | |||| || ||||| ||| | ||| || | | ||||| Sbjct 256037 ACTGAAGGAATCAGCATGTTCT---CCCTGGCCTAGAGGCCCGGGCAACCCGCTGAAACT 255981 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||||||||||| | | |||||||||| | | | |||||||||| ||||||||| Sbjct 255980 CCTTCGTGCTGGGGATTGGGGTTTGCAATTATCCCCCATAAACGAGGAATTCCTAGTAAG 255921 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||| ||| |||||||||||||||||||||||||||| Sbjct 255920 CGCGAGTCATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 255878 >seq33844 Length=741 Score = 210 bits (232), Expect = 4e-52 Identities = 176/215 (82%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 740 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGG 681 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 | || | |||| || ||||| ||| | ||| || | | |||||| ||||| Sbjct 680 AATCAGCATGTTCT---CCCTGGCCTAGAGGCCCGGGCAACCCGCTGAAACTCCTTCGTG 624 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 |||||||| | | |||||||||| | | | |||||||||| ||||||||||||| ||| Sbjct 623 CTGGGGATTGGGGTTTGCAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTC 564 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| |||||||||||||||||||||||||||| Sbjct 563 ATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 529 >seq38352 Length=859 Score = 161 bits (178), Expect = 2e-37 Identities = 168/216 (78%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | ||||| || | ||||| |||||||||||||||| Sbjct 211 CTTCTTAGAGGGACCGGCGTCTTCGAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 154 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| || || | || || Sbjct 153 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCATGT---TCT 97 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || ||||| ||| | ||| || | | |||||| ||||||||||||| | | ||| Sbjct 96 CCCTGGCCTAGAGGCCCGGGCAACCCGCTGAAACTCCTTCGTGCTGGGGATTGGGGTTTG 37 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGC 286 ||||||| | | | |||||||||| |||||||||| Sbjct 36 CAATTATCCCCCATAAACGAGGAATTCCTAGTAAGC 1 >seq13612 Length=593 Score = 158 bits (174), Expect = 2e-36 Identities = 197/258 (76%), Gaps = 19/258 (7%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | ||||| || | ||||| |||||| |||||||| Sbjct 495 CTTCTTAGAGGGACCGGCGTCTTCGAGCCGCACGA-GATTGAG-CAATAA--GGTCTGTG 440 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| |||||||||||||||||||||| || || | | | |||| || Sbjct 439 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACAC-GAAGGATC-AGCATGTTC-TCT 383 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || | ||| | || | | | | || || |||||||||| | | | ||| Sbjct 382 GCTAG------AGGCCCGGCAACCC--GCTGAATCCT-TCGTGCTGGGATTGGGG--TTG 334 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| ||||||||||||| ||||| ||| |||||||||| Sbjct 333 CAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 274 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 273 ACGTCCCTGCCCTTTGTA 256 >seq756 Length=6248677 Score = 127 bits (140), Expect = 4e-27 Identities = 93/108 (86%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 |||||| ||||||||||||| | | |||||||||| | | | |||||||||| |||| Sbjct 4028603 AAACTCCTTCGTGCTGGGGATTGGGGTTTGCAATTATCCCCCATAAACGAGGAATTCCTA 4028544 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| ||||| ||| |||||||||||||||||||||||||||| Sbjct 4028543 GTAAGCGCGAGTCATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 4028496 >seq460 Length=1734898 Score = 82.4 bits (90), Expect = 1e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 |||||| ||||||||||||| | || ||||||| ||| | ||||| | | || | Sbjct 1407919 AAACTCCTTCGTGCTGGGGATTAGGGTTTCCAATTATCCCTCATGAACGAATAGTTCCCA 1407860 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| | ||||| ||| ||| ||||||||||||| |||||||| Sbjct 1407859 GTAAGCGTGAGTCATAAGCTAGCGATGATTACGTCCCTATCCTTTGTA 1407812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946788318464