Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value SEQ58105 122 7e-23 >SEQ58105 Length=99015 Score = 122 bits (134), Expect = 7e-23 Identities = 140/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACG-AT 61492 ||| || || |||||| | | ||||| | || | ||| || |||||||| ||||| || Sbjct 17135 GAAGGCAGACTGGGCCCTACAATGGATTGCAAGCAAAACTGCAACATTTGGAGAACGTAT 17194 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || | |||||||| | ||| |||||| | |||||| || ||||| | ||||||| Sbjct 17195 TG-TAGCATTTGCAGCGGTAGAGGGTATTTTTTTCTCAGGCAGTTTTGCTTCTATCTTTT 17253 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 |||| ||||| |||||||| ||||| ||| |||| ||||| |||||| | || ||| | | Sbjct 17254 GGTTAAAGAAGCGTGGACTCATGCCTGGTTTGACTTTCAGTAATGAGCTTATTTCAAGAG 17313 Query 61613 ACGAGG 61618 | |||| Sbjct 17314 ATGAGG 17319 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 61191 ACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAA 61250 ||||||||||||||| || | || || ||||| || || || || || |||||||| || Sbjct 16280 ACATTTCATTAAACACGTTCTAGCATTTTTTGCTGCATCTGATGGAATTGTCAATGAAAA 16339 Query 61251 TTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTT 61310 | || |||| || || | || ||||| ||||| | ||||| | | ||||| || || Sbjct 16340 TCTAGTGGAGCGATTTTCACAAGAGGTTCAAGTTACTGAGGCCAGATTCTTCTATGGGTT 16399 Query 61311 CCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 ||| || |||||||| ||||| ||||| || |||||| Sbjct 16400 CCAAATAGCCATGGAAAATGTTCACTCTGAAATGTAC 16436 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||||||| | || || |||||| | || || | || || ||| ||||| ||| Sbjct 16044 GAACCCCTACTAAGGGATAACCCTCGTAGATTTGTTATATTTCCTATCCAGTATCCAGAT 16103 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| ||||||||||| || ||||||||||| ||||| || || || || ||||| Sbjct 16104 ATTTGGGAAATGTACAAAAAAGCCGAAGCTTCCTTTTGGACTGTTGAAGAAGTGGATTTA 16163 Query 61147 TCCAA 61151 || || Sbjct 16164 TCAAA 16168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397242590467760