Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq59 163 1e-37 >seq59 Length=7018 Score = 163 bits (180), Expect = 1e-37 Identities = 211/289 (73%), Gaps = 12/289 (4%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||| | ||||| ||| |||||||| | Sbjct 3561 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACCTGTATGCAAGTCATTGGGTGTAAC 3620 Query 464 --AACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGA 521 |||| ||||| |||||| || | ||| || || | | || | ||| Sbjct 3621 TAAACCTAAAGGCGTAGTGAAAGCAAATGTAGGGATGATCCTTTTATCAGGCGCAATC-- 3678 Query 522 CCGATCCT----GATGTCTTCGGAT---GGATTTGAGTAAGAGCATAGCTGTTGGGACCC 574 |||| || | | | ||| | | | |||| ||||||| |||||||||| Sbjct 3679 CCGACTCTTTGCGTAGACCTCGTTTCTCGCAGAGAAGTATGAGCATACAAGTTGGGACCC 3738 Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634 |||||||||||||||||||||| ||| |||| ||| |||||| ||| |||||| || Sbjct 3739 GAAAGATGGTGAACTATGCCTGGCCAGGTCGAAGTCAGGGGAAACCCTGATGGAGGACCG 3798 Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| ||||| ||||||||||||||||| | ||||||||||||||| Sbjct 3799 TAGCGATTCTGACGTGCAAATCGATCGTCGGAGCTGGGTATAGGGGCGA 3847 Score = 116 bits (128), Expect = 2e-23 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||||||| ||| | || ||||| || || ||||||| | || ||| ||||||| Sbjct 3058 GAGTCGAGTTACTTGAAAGTGTAGCTCAAAGTGTGAGGTAAGCTCCTCATAAGGCTAAAT 3117 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || |||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 3118 ATCACCCCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 3177 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGT 186 |||||||| || || |||||||| ||| Sbjct 3178 AGAGAGTTCAAGAGTACGTGAAACTGT 3204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2073809186800