Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq59 336 4e-90 seq99653 188 1e-45 >seq59 Length=7018 Score = 336 bits (372), Expect = 4e-90 Identities = 217/236 (92%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 6071 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 6012 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || Sbjct 6011 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACGCTTGGCG 5952 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 5951 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 5892 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 5891 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAATTTTTCTGGCACCTCT 5836 >seq99653 Length=1607 Score = 188 bits (208), Expect = 1e-45 Identities = 183/232 (79%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| | | | ||||| || | ||||| | |||||||||||| |||||||||| |||| Sbjct 228 TACTGAACAGGATTACTATCGCAACGACGAGGCATCAGTAGGGTGAAACTAACCTTTCTC 287 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 ||||||| |||||| |||||||||||||||| | |||||||||| | |||| || Sbjct 288 GCGACGGTCGAAACCCTATTCACGTTCCCTATTAGCAGATGAACAATCCGATGCTTGGCG 347 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 || ||| ||||| || ||| || ||| |||||||| ||||| |||| | || || || Sbjct 348 AACTCTACTTCGAAATAATAAAAATAGCAGACATCGAGGGATC-AAAATCGACAGCGATA 406 Query 180 TGAACGCTTGGCTGCCACAAGCC---AGTTATCCCTGTGGTAACTTTTCTGG 228 |||||||| ||| |||||||||| |||||||||| |||||| |||||||| Sbjct 407 TGAACGCTCGGCCGCCACAAGCCAGTAGTTATCCCTCTGGTAATTTTTCTGG 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 851934064896