Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq67997 257 6e-66 seq261509 196 2e-47 seq82535 181 4e-43 >seq67997 Length=6648 Score = 257 bits (284), Expect = 6e-66 Identities = 322/442 (73%), Gaps = 0/442 (0%) Strand=Plus/Plus Query 161 TCGTCGTAGTTGCCCGGGAACAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTA 220 || || |||||||||||| | | | || ||||||||||| || |||||||| || Sbjct 6078 TCATCATAGTTGCCCGGGTATATCTTAATTTCTCCGTAGTCCAGATCTGCCATGTGTGTG 6137 Query 221 CACACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTGG 280 || || ||||||||||| || || || || |||||||||||||| |||| || | | Sbjct 6138 CAAACACTGTTCAGGAAATGGCGATCATGCGAGATGATGATCATAGTGCTGTTGCGTTCG 6197 Query 281 GTCAGGATATTTTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCG 340 | || | | |||||| |||||| ||||||||||| || | | |||||| ||||| ||| Sbjct 6198 TTAAGCACACTTTCCAACCAGCGAATGGTGTTGATATCGAGATTGTTGGTAGGTTCATCG 6257 Query 341 AGCAACAGCACTTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAG 400 || | || | ||||| |||| || |||||||| |||| | |||||||| || Sbjct 6258 AGTAGCAATAAATCAGGGTCGGCGAAGAGCGCCTGAGCCAAAAGAACACGCAGTTTGTCA 6317 Query 401 CCCGGGGACACTTCGCTCATCGGACCGAAGTGCTGCTCCAGCGGAATACCCAGACCCAGC 460 ||||| | |||||||||||| || | | ||||||||| | || || | || ||| Sbjct 6318 CCCGGAGCCACTTCGCTCATTGGCACCATGTGCTGCTCGATAGGGATTGCAGCGCCGAGC 6377 Query 461 AGCAGCTCACCGGCACGGGATTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCC 520 || || || |||||||| | || || | ||| ||||| | ||| ||||||| ||| Sbjct 6378 AGTAGTTCGCCGGCACGAGCCTCAGCAGAGTATCCGTCAAGCTCTGCGAACTGAACTTCT 6437 Query 521 AGCTCGGCCACGGCCATGCCGTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATACCATCA 580 || | |||||| ||||||||| ||||| |||||||| |||| |||||||| ||| Sbjct 6438 AGGTTGGCCACCCGCATGCCGTCGTCTTCACTCATTTCTGGCAAAGAGTAAATTTGATCG 6497 Query 581 CGCTCGGCCTTGACCTTCCACA 602 ||||| |||||| |||||| Sbjct 6498 CGCTCTTCCTTGATGGTCCACA 6519 >seq261509 Length=1853 Score = 196 bits (216), Expect = 2e-47 Identities = 397/578 (69%), Gaps = 10/578 (2%) Strand=Plus/Minus Query 10 TTTGGCACGGGAAGTGGCCTTGCTTTGGCTTTTCGAGGCGTTCGCCGAGAAACGGCTTGA 69 ||| || || || || || |||||| | ||||| ||||| || |||||||| || || | Sbjct 1601 TTTTGCCCGAGAGGTCGC-TTGCTTAG-CTTTT-GAGGCATTTGCCGAGAACCGACTC-A 1546 Query 70 CGAAGGATTT-GCAGCTCGGTGATCTGCGCCTTCTTTCTTGGCGTTGTCCGACAGCAGTT 128 | || |||| ||| ||| | || ||||| || |||||| || || || ||| || | Sbjct 1545 CAAA--ATTTCGCAACTCAGCAATTTGCGCTTT-TTTCTTTGCATTATCGGACGCCAATC 1489 Query 129 GCTCGCGGGACTGG-GTCGCCACGGTCATGTACTCGTCGTAGTTGCCCGGGAACAGGCGC 187 | || ||| ||||| ||||||| || || ||||| || || || || || || Sbjct 1488 GTTCTTTA-ACTAACGTCGCGGCGGTCATATATTCATCGTAATTCCCAGGAAAAAGACGA 1430 Query 188 AGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTGACGGTCG 247 | || ||||| |||| || || ||||| ||||| || | | ||||| | ||| Sbjct 1429 ATTTCACCGTAATCCAAATCGGCAATGTGCGTACAAACTGAATGTAAAAAGTGCCTATCG 1370 Query 248 TGAGAGATGATGATCATCAGGCTGGAACGCTGGGTCAGGATATTTTCCAGCCAGCGGATG 307 || ||||| || ||||| | || ||||| ||| | ||||||| ||| || || Sbjct 1369 TGCGAGATTATAATCATAATACTATTACGCTCTTGCAGTACTTTTTCCAACCAACGAATC 1310 Query 308 GTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATCGGAAAAC 367 || | ||| ||||||| || |||||||| || | || | | || ||||| |||||| Sbjct 1309 GTATGGATATCCAAGTTATTTGTCGGTTCATCTAATAATAAAATATCCGGATCTGAAAAC 1250 Query 368 AGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCTCATCGGACCG 427 ||||| || |||| ||||| |||| |||||| || |||| ||| |||| || Sbjct 1249 AGCGCTTGCGCCAATAATACTCGCAACTTCCACCCAGGGGCCACAGATGACATCAATCCA 1190 Query 428 AAGTGCTGCTCCAGCGGAATACCCAGACCCAGCAGCAGCTCACCGGCACGGGATTCGGCG 487 | ||| ||| | | |||||| | ||| || || || || || || || || || Sbjct 1189 TAATGCAACTCAACCTCAATACCGACACCAGCCAATAGTTCGCCCGCTCGAGACTCTGCC 1130 Query 488 GTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGCCACGGCCATGCCGTCTTCT 547 || |||||||||||||| || ||||| |||| || || || | |||||||||| Sbjct 1129 GTATAGCCGTCCATCTCTGCAAACTCCACCTCCAAGTCCGCTACCTTTAAGCCGTCTTCT 1070 Query 548 TCGCTCATTTCCGGCAGCGAGTAAATACCATCACGCTC 585 ||||||||||| | || || |||| |||||||| Sbjct 1069 TCGCTCATTTCACTTAATGAATAGATACGGTCACGCTC 1032 >seq82535 Length=4956 Score = 181 bits (200), Expect = 4e-43 Identities = 291/418 (70%), Gaps = 0/418 (0%) Strand=Plus/Plus Query 153 TCATGTACTCGTCGTAGTTGCCCGGGAACAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCA 212 |||| | || || ||||||||||| ||| || ||||| ||||| || | ||||||| Sbjct 4055 TCATAAAATCATCATAGTTGCCCGGATACACCCGAAGCTCTCCGTAATCGATATCAGCCA 4114 Query 213 TGTGGGTACACACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGATGATCATCAGGCTGG 272 | || || || || ||| ||||| || | ||||| |||||||||||||| || Sbjct 4115 TATGTGTGCAGACTGAGTTTAGGAAATGTCTATCGTGCGAGATGATGATCATGGTACTTT 4174 Query 273 AACGCTGGGTCAGGATATTTTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCG 332 | ||| | | | ||| | ||| || |||| || |||||||||| |||||| | Sbjct 4175 TCTGTTGGCTTAATACGCCTTCTAACCAACGAATGGCATTAATGTCCAAGTTGTTGGTTG 4234 Query 333 GTTCGTCGAGCAACAGCACTTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGCA 392 |||| || |||| ||| | ||||| || |||| ||||| || || | |||||| | Sbjct 4235 GTTCATCCAGCAGCAGAATATCAGGGGATGAGAACAAAGCCTGAGCGAGAAGTACACGTA 4294 Query 393 GCTTCCAGCCCGGGGACACTTCGCTCATCGGACCGAAGTGCTGCTCCAGCGGAATACCCA 452 | ||||||||||| | ||||| |||||||| || || ||| | | | ||| || Sbjct 4295 GTTTCCAGCCCGGTGCAACTTCACTCATCGGGCCAAAATGCAGTGACTCCCCAATTCCGG 4354 Query 453 GACCCAGCAGCAGCTCACCGGCACGGGATTCGGCGGTGTAGCCGTCCATCTCGGCGAACT 512 ||| | | || || || || ||| || || ||||| ||||| ||||| |||| Sbjct 4355 CACCACTTAAGAATTCTCCTGCTCGACTTTCTGCCGTATAGCCATCCATTTCGGCAAACT 4414 Query 513 CGGTTTCCAGCTCGGCCACGGCCATGCCGTCTTCTTCGCTCATTTCCGGCAGCGAGTA 570 | ||| || ||||| || ||||||||| ||||| |||||||||||| ||||| Sbjct 4415 CAACTTCGAGTTCGGCGACTCGCATGCCGTCAGCTTCGGTCATTTCCGGCAATGAGTA 4472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1875999695136