Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= AAMG01001590.1 Length=402 Score E Sequences producing significant alignments: (Bits) Value seq190761 73.4 9e-11 >seq190761 Length=869 Score = 73.4 bits (80), Expect = 9e-11 Identities = 236/358 (66%), Gaps = 14/358 (4%) Strand=Plus/Minus Query 2 GAGGACATCTACAGCCGAAAGGCCGTGGGCTGGGAAGTTTACGAGCAAGAAAGTGGCGAG 61 || ||||| ||||||||||| |||||| | || || |||| ||||| | |||||| Sbjct 661 GAAGACATTTACAGCCGAAAAATCGTGGGTTATGAGGTCTACGCAAAAGAATGCGGCGAG 602 Query 62 CTGGCGGCCGAACTGATGCAGCGCACCGTGCTCACCGAAC---GC-TGCGCCGGACGG-- 115 ||||| || | || | ||||| | | || | |||| || | | | | ||| Sbjct 601 CTGGCTTCCCAGCTATTACAGCGATGCATACTGAAAGAACAGGGCTTTAGTCAGGCGGAT 542 Query 116 CCCTTAGTGCTGCACTCGGACAACGGTGCACCGATGAAATCGGTGACGTTGCTGAGC-AA 174 || | ||| | || || || || ||||| || ||||| || |||| ||| ||| || Sbjct 541 CCACTCGTGTTACATTCCGATAATGGTGCGCCTATGAAGTCATTGACCTTG-AAAGCAAA 483 Query 175 ACTGTACGAACTCGGCATCACCCCGTCACGCGGACGACCACGGGTGAGTAACGATAATCC 234 | || | || || || || | | || | | || || | ||||| |||||||| || Sbjct 482 AATGGAAGAGCTGGGTATTGTCTCATCCTACAGTCGCCCGAGAGTGAGCAACGATAACCC 423 Query 235 CTACTCAGAATCGCTGTTTAGAACCCTGAAATATTGCCCG--CAA-TGGCCTCCTGGTGG 291 || ||||| | | |||| |||| |||| || || | ||| ||||| | |||| Sbjct 422 GTATTCAGAGGCATTATTTAAAACCTTGAAGTA---CCGGGACAACTGGCCATCGAGTGG 366 Query 292 TTTTGCAGATTTGGACGCGGCACGCAGCTGGGTGCGCGATTTTATCCGCTGGTACAAC 349 ||| | | |||| | |||||| |||||| | | ||||| | ||||||||| Sbjct 365 CTTTTTAAGTGTGGAAGATGCACGCGACTGGGTTCACCATTTTGTTGATTGGTACAAC 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180582786560