Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= AAMG01001693.1 Length=610 Score E Sequences producing significant alignments: (Bits) Value seq2339 93.3 2e-16 seq262960 84.2 8e-14 seq157813 80.6 1e-12 >seq2339 Length=647 Score = 93.3 bits (102), Expect = 2e-16 Identities = 122/167 (73%), Gaps = 14/167 (8%) Strand=Plus/Plus Query 202 TGCTGGTTCACTCGGATCAAGGGTCGCAGTATGCGAGT----CGTTTATTTCGCCAGCGG 257 || || ||||||| |||||||| | || || ||||| |||| | | || | Sbjct 299 TGATGTTTCACTCTGATCAAGGATGCCATTACACGAGTAAAGCGTTCA----GACAAAGC 354 Query 258 CTGTGGCGTTATCG---CATGCGCCAGAGCATGAGTCGCCGGGGAAATTGCTGGGACAAT 314 |||||| || ||| ||| | | |||||||| |||||||| ||||| ||||||||| Sbjct 355 TTGTGGCATTGTCGAGCCATAC---AAAGCATGAGCCGCCGGGGTAATTGTTGGGACAAT 411 Query 315 GCGCCAATGGAGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACC 361 || || |||||||| || ||| | ||||| |||||||| ||||| || Sbjct 412 GCCCCGATGGAGCGTGTCTTCAGGAGCTTTAAAACGGAATGGATGCC 458 >seq262960 Length=559 Score = 84.2 bits (92), Expect = 8e-14 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 205 TGGTTCACTCGGATCAAGGGTCGCAGTATGCGAGTCGTTTATTTCGCCAGCGGCTGTGGC 264 || |||| || |||||||| || ||| |||| |||| | || | | |||| Sbjct 548 TGTTTCATTCAGATCAAGGCAGTCAATATACGAGCTTGAGATTTAGGCAATTGTTATGGC 489 Query 265 GTTATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGCTGGGACAATGCGCCAATGG 324 | || ||||| ||||||||||| | || || ||||||||||| ||||| ||||||| Sbjct 488 GCTACCGCATTAAACAGAGCATGAGCAGGCGTGGTAATTGCTGGGATAATGCACCAATGG 429 Query 325 AGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACCACGGGTTA 373 | | || ||| | || |||||||| || ||| | || | || |||||| Sbjct 428 AAAGAGTATTCAGAAGTTTGAAAACCGAATGGGTTCCCATCAAGGGTTA 380 >seq157813 Length=1168 Score = 80.6 bits (88), Expect = 1e-12 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 257 GCTGTGGCGTTATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGCTGGGACAATGC 316 ||| ||||| || ||||| ||||||||||| | || || ||||||||||| ||||| Sbjct 465 GCTATGGCGCTACCGCATTAAACAGAGCATGAGCAGGCGTGGTAATTGCTGGGATAATGC 524 Query 317 GCCAATGGAGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACCACGGGTTA 373 | |||||| | || ||| | || |||||||| || ||| | || | || |||||| Sbjct 525 ACTAATGGAAAGAGTATTCAGAAGTTTGAAAACCGAATGGGTTCCCATCAAGGGTTA 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1840904462744