Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq59 129 6e-28 >seq59 Length=7018 Score = 129 bits (142), Expect = 6e-28 Identities = 138/178 (78%), Gaps = 7/178 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT----GCTCGAATACATTACCA 68 ||||||||||||||||||||| | ||||||||||| || ||| ||||| || Sbjct 738 TTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCTGTTAAAAGCTTGAATATTCGTGCA 797 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC-CGTAAT 127 |||||||||| ||||||| || || ||||||||||| |||| | ||| | | |||| Sbjct 798 TGGAATAATAAAATAGGAAGT-CGTTTCTATTTTGTTGGTTG-TCGGAAATCGACTTAAT 855 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| |||| ||| ||||||||| | |||||||| | || |||||||||||||||| Sbjct 856 GATTAATAGGGACAGTCGGGGGCATTAGTATTCAGACGACAGAGGTGAAATTCTTGGA 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510568464640