Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq59 183 6e-44 >seq59 Length=7018 Score = 183 bits (202), Expect = 6e-44 Identities = 199/258 (77%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||||| || || ||| || | ||||| |||||||||||||||| Sbjct 1380 CTTCTTAGAGGGACTGGTAGCGTCTAGCTACACGA-GATTGAG-CAATAACAGGTCTGTG 1437 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||||||||||| |||||||||||||||||| || || || ||| || Sbjct 1438 ATGCCCTTAGATGTTCTGGGCTGCACGCGCGCTACACTGAAAGGATCAGCGTGTT-TTCT 1496 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | |||||| ||| |||||| | | || | || ||||| | ||||| | | ||| Sbjct 1497 C--TGGCCGAGAGGCTCGGGTAACCCGTTGAACCCCTTTCGTGGTAGGGATCGGGGCTTG 1554 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | ||| |||||| || |||||||| ||||| ||| |||||||| Sbjct 1555 CAATTATTCCCCGTGAACCAGGAATTCCCAGTAAGCGTAAGTCATAAGCTTACGTTGATT 1614 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1615 ACGTCCCTGCCCTTTGTA 1632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944466229248