Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq59 448 2e-123 seq9043 172 2e-40 seq10111 141 3e-31 >seq59 Length=7018 Score = 448 bits (496), Expect = 2e-123 Identities = 432/550 (79%), Gaps = 34/550 (6%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| ||||||||||||| |||||| Sbjct 5745 CTTTTGCTCTACGTGAGGTTTCCGTCCTCACTGAGCTGGCCTTAGGACACCTACGTTATT 5686 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||| ||||||||| |||||||||| ||| ||||||| || ||| | Sbjct 5685 GTTTGGTAGATGTACCGCCCCAGTCAAACTCCCCGCCTCGCAATGTCCTC-----GGAGC 5631 Query 127 GGCCCGCGAAGGACC------TTAACG-------CCAGAAAATGGTCGGTGAAGACCAGT 173 | | ||||| ||| | |||| | ||||||| || |||| | || Sbjct 5630 AGGTCTCGAAGAACCAAAGGCTCAACGATTGAGACAAGAAAATA-TCT-TGAAATCAAGA 5573 Query 174 T----CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC 229 | | |||| | || |||| | | | |||| |||| ||||||||| ||| Sbjct 5572 TAACCCTGCTTAACCGAGTAAGCAGAGGAGCGATCTTAGTAGGAGTATTTCACCGGCGAT 5513 Query 230 GAAACGG--CTCCCACTTATTCTACACCTCTCAAGTCATTTC---ACAAAGTCGGACTAG 284 || | |||| | |||||||| || |||| | | |||| |||||| Sbjct 5512 ACAAAGTATCTCCTCCCTATTCTACGCC---CAAGATGCTCCGCCACAATAAGAGACTAG 5456 Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 |||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 5455 AGTCAAACTCAACAGGGTCTTCTTTCCCCGCTGATCTTTCCAAGTCCGTTCCCTTGGCTG 5396 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5395 CGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 5336 Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5335 ACTAATNN--TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 5278 Query 465 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5277 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 5218 Query 525 GCGTCAACAT 534 |||||| ||| Sbjct 5217 GCGTCATCAT 5208 >seq9043 Length=3860 Score = 172 bits (190), Expect = 2e-40 Identities = 100/103 (97%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 330 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAAT 389 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3859 CCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCTTTAAT 3800 Query 390 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3799 CCATTCATGCGCGTCACTAATTAGATGACGAGGTATTTGGCTA 3757 >seq10111 Length=1476 Score = 141 bits (156), Expect = 3e-31 Identities = 81/83 (98%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCAGTCATGCGCGTCACTAA 60 Query 410 TTAGATGACGAGGCATTTGGCTA 432 ||||||||||||| ||||||||| Sbjct 61 TTAGATGACGAGGTATTTGGCTA 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1630480551168