Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq14098 127 5e-25 seq287714 107 5e-19 >seq14098 Length=52687 Score = 127 bits (140), Expect = 5e-25 Identities = 421/652 (65%), Gaps = 2/652 (0%) Strand=Plus/Plus Query 37651 AATGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGA 37710 ||||||||||||||||||||| || | || ||||||| ||| || ||| ||| Sbjct 21731 AATGAAACAATATTTAGACTTATTGGCGCATATTCTAGAAAATGGCACAGAGAAATCAGA 21790 Query 37711 CCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGA 37770 ||||||| || || || || || | || | || || | ||| ||| Sbjct 21791 TAGAACGGGTACAGGTACTAAAAGTGTATTTGGTCATCAAATGCGATTTGATTTAACAGA 21850 Query 37771 TGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCT 37830 |||||||| | | ||||| |||||| | ||| | | || || ||||| ||||| || Sbjct 21851 AGGATTTCCTTTATTAACAACTAAAAAACTTCATTTGCATTCTATTATTTACGAACTACT 21910 Query 37831 TTGGTTTTTAAAAGGCGATACGAACGTCCGC-TATTTGCAGGAGAATGGCGTGACGATTT 37889 ||||||||| ||||| ||||| || |||| ||| | | ||||||| || | |||| Sbjct 21911 TTGGTTTTTGAAAGGTGATACTAA-TACCGCTTATCTAAAAAAGAATGGGGTTAGTATTT 21969 Query 37890 GGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCT 37949 ||||||| ||||| || || || || ||| | || ||| | || || ||||||| | Sbjct 21970 GGGATGAATGGGCTGATGATAAGGGTGATTTAGGTCCGGTATATGGTAAGCAATGGAGAA 22029 Query 37950 CGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAGATCA 38009 ||| | || || | || || || || || || | ||| | || | || | Sbjct 22030 GTTGGCAAGGTGCTAATGGACAAGTGATTGATCAAATTTCTCAGGTGTTAGAGCAAATTA 22089 Query 38010 AACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACG 38069 || | || |||| | | || | || | ||||||||| || | ||||| || | Sbjct 22090 AAAATACCCCAGATTCTAGAAGAATGATTGTTAACGCTTGGAACGTTGGTGAATTAGATG 22149 Query 38070 AGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTGT 38129 | ||| | | || |||||| | || || || ||||| || || || | |||| Sbjct 22150 ATATGGCTTTATCTCCCTGTCATGCCTTGTTCCAATTTTATGTAGCAAATGGACAATTGT 22209 Query 38130 CATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGA 38189 | || | | || | ||| |||| ||||||||| |||| ||||| || || | Sbjct 22210 CTTGTCAGCTTTACCAAAGATCCTGTGATGTGTTTTTAGGACTGCCTTTTAATATTGCTA 22269 Query 38190 GCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAACTCA 38249 |||| || ||| |||| | ||||| || || ||| | || | | ||| | Sbjct 22270 GCTATGCTCTGATGACAGAAATGGTGGCAAAAGTATGTGGTTTAAAGGCTAAAGAATTTG 22329 Query 38250 TTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAA 38301 ||| || || || || || |||||||| ||| ||| | || ||||| || Sbjct 22330 TTTGGACGGGAGGGGATGTTCATTTGTATTCAAACCATTTAGAGCAAGCTAA 22381 >seq287714 Length=1605 Score = 107 bits (118), Expect = 5e-19 Identities = 347/528 (66%), Gaps = 8/528 (2%) Strand=Plus/Plus Query 37787 ACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGC 37846 || || || ||| | || | || || || ||| |||||| | |||||||| || Sbjct 837 ACGACTAAGAAACTTCACCTTCGTTCTATTATTATCGAACTGTTATGGTTTTTGCGTGGT 896 Query 37847 GATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGAC 37906 | ||||| || | |||||||| || ||||| | ||||||||||| ||||| || Sbjct 897 GGAACGAATGTTAAATGGTTGCAGGATAACGGCGTTTCTATTTGGGATGAATGGGCAGAT 956 Query 37907 GAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGAC 37966 |||||||| ||||| || || |||| || |||||||| || ||| | | || Sbjct 957 GAAAACGGTGATCTTGGTCCTGTTTATGGGTATCAATGGCGGTCTTGGCCAACACCTGAT 1016 Query 37967 GGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAG-ATCAAACGAAATCCGCATTC 38025 || || ||| || || || | | |||| ||||| | ||| |||||| |||| Sbjct 1017 GGTGGAAGCATTGATCAAATAAAAGGTCTTGT-TAAGAGCCTTAAAGAAAATCCAAATTC 1075 Query 38026 ACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCC 38085 ||||| | | || ||||||||||| ||| | || || ||| ||||||| Sbjct 1076 GCGCCGACATATTGTTAGCGCTTGGAACCCAGCTTTGGTTGATGATATGGCCTTGCCGCC 1135 Query 38086 GTGTCATTACG-CCTTTCAGTTCTATGTCGCCAACGGCCGGTTGTCATG-CATGTGGCAG 38143 ||||| |||| |||||||| ||||| || | || |||||| || || | | Sbjct 1136 TTGTCA-TACGATGTTTCAGTTTTATGTGGCGGATGGAAAGTTGTCTTGTCAACT-TTAC 1193 Query 38144 CAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTG 38203 || || || | |||| || ||||| |||||||||| || || || ||||| | Sbjct 1194 CAACGTTCTGCGGATATCTTCTTAGGTGTGCCGTTTAATATTGCCTCTTATGCGCTTCTT 1253 Query 38204 ACGCAT-ATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAACTCATTTTCACCGGCGG 38262 || ||| ||| |||| ||| || || || || || || || | || || || Sbjct 1254 AC-CATGATGTTAGCGCAAGTTTGTGATTTAGAAGTAGGCGATTTTGTTCATACGTTTGG 1312 Query 38263 CGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCT 38310 ||| | ||| | || | ||||| | |||||||| ||| |||||| Sbjct 1313 CGATGCTCATATTTATCATAATCACTTTGAACAAGCCAAAGAGCAGCT 1360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130192255568400