Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq124498 118 8e-22 >seq124498 Length=1304 Score = 118 bits (130), Expect = 8e-22 Identities = 237/346 (68%), Gaps = 14/346 (4%) Strand=Plus/Minus Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 || ||| || || ||| | ||||| |||||||| ||||| ||||| ||| ||||| Sbjct 387 TACCTCATCCGGTGCGCTGTACTCCACAATTTCCGTGCATAGATTGGAGCATTTAATGGT 328 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 ||| | ||||||||||| ||| || ||||| ||||||||||| | ||| || || || Sbjct 327 GCCTAGGTTCTGTTGATTGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATATAAGGCGT 268 Query 66154 GCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA------GAGCGCGTGCCT-TCA 66206 || ||||| | ||| |||||||||||||| | ||| | |||| | ||| || Sbjct 267 TCCCGTCTCGATTTGCGACTCAATGATGGCCTCCCAGATCTTTTGAGCCGGGACCTGTCG 208 Query 66207 CCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCAC 66266 || || || |||| || || || || | ||| | | || |||| || | Sbjct 207 CC-TA--TAATTCCCTTCC---GC-CTCATACTTCAAGTACAAGCTCTCAAAGGCCTCTC 155 Query 66267 CCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCT 66326 |||| || | | | || | || || || ||||||| |||| | ||||||| Sbjct 154 CCCAGCAGTCCGCTAATCCAGGGCTCTCATGCGGGCACATCAAGCTCCAAACGCCATCCT 95 Query 66327 GTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 ||| ||||| ||| || ||||| || ||||||||||||||||| Sbjct 94 CTTCCACACGCTTCATGAAGAGATCCGGGATCCAGAGGGCGTAGAA 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396169551578240