Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq181988 178 4e-40 seq24049 161 3e-35 seq283833 138 4e-28 seq282620 118 3e-22 seq221007 80.6 8e-11 >seq181988 Length=4856 Score = 178 bits (196), Expect = 4e-40 Identities = 277/394 (70%), Gaps = 4/394 (1%) Strand=Plus/Minus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| || || |||| ||||| || |||| |||| || ||||||||||||||| || Sbjct 4545 TACCCTATTGTCTCTATTGAAGACGGCTTGGATGAAAGTGATTGGGACGGTTGGAAAACT 4486 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAA- 2639 | | || ||| | | |||| | ||||||||||| || ||||| || || || || Sbjct 4485 TTGTCGGATCGTTTGAACGATAAAATACAATTGGTTGGCGATGACTTGTTTGTCACCAAT 4426 Query 2640 -CACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAG 2698 || || | | |||||||||| || | ||||||||| |||| || || | Sbjct 4425 CCAAAAATTT--TAGCCAAAGGTATTGAGCAAAATATTGCTAACTCCGTCCTCATTAAGG 4368 Query 2699 TTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTG 2758 | || || || || ||| ||| ||| ||| | || |||| ||||| | | |||| Sbjct 4367 TGAATCAGATTGGAACTCTGAGTGAGACTCTGGAGACTATTCGCATGGCCCACAAGGCTG 4308 Query 2759 GATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATA 2818 | ||||| | || || || ||||| ||||| || ||||| | || || |||||| Sbjct 4307 GCTACACGACCGTTACCTCTCATCGTTCGGGTGAGACCGAAGACACCACCATTGCTGATT 4248 Query 2819 TTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTA 2878 | || |||||||| ||| | ||||| || |||||||||||||| || ||||| | | Sbjct 4247 TGGCTGTTGCAACGAACTCGAAGCAAATCAAAACAGGTTCATTGTCTCGATCTGACAGAA 4188 Query 2879 TTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 | || ||||| ||||||||| | ||||| ||||| Sbjct 4187 TAGCGAAATATAACCAATTGTTGCGTATTGAAGA 4154 >seq24049 Length=14107 Score = 161 bits (178), Expect = 3e-35 Identities = 277/402 (69%), Gaps = 0/402 (0%) Strand=Plus/Minus Query 2523 CCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCTCT 2582 |||||| ||| |||| ||||| ||||||| ||| | |||||||| || |||||| ||| Sbjct 1361 CCCAATTATCTCTATAGAAGACGGTATGGCAGAAGAAGACTGGGATGGATGGAAACTTCT 1302 Query 2583 TACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACAC 2642 || ||| | ||| ||| ||||||||| || || || || || || || || | Sbjct 1301 AACAGAAAAAATAGGTAGTACGACTCAATTGGTAGGAGATGATTTATTTGTCACAAATCC 1242 Query 2643 TGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAA 2702 | || | || | | ||||||| || | ||||||||| ||| | || ||||| || Sbjct 1241 TTCTATCTTTAAGCAGGGTATTGATAAAAATATTGCTAACTCTATCTTGATAAAAGTGAA 1182 Query 2703 CCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATA 2762 ||||| || ||| | | ||||| | | |||||| | ||||| ||||| | || Sbjct 1181 TCAAATAGGAACTATCTCAGAAACACTAAAAGCTATCAATATGGCTGAAGAAAGTAATTA 1122 Query 2763 CACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGC 2822 | || || || || ||| | || |||||||||||| |||| || ||||||||| | Sbjct 1121 TAGTGCCGTGGTTTCTCACAGAAGTGGAGAAACTGAAGATGCAACTATTGCTGATATTTC 1062 Query 2823 AGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGC 2882 || ||||||| || |||||||| ||||| || ||||| | | || | ||||| Sbjct 1061 TGTGGCAACTAGTGCAACACAAATTAAAACAGGATCTTTGTCTAGATCAGATAGAATTGC 1002 Query 2883 TAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGA 2924 ||||| || | ||| | || ||||| ||||| || || Sbjct 1001 AAAATATAATCGCTTGTTATTGATTGAAGAGCAACTAGGAGA 960 >seq283833 Length=1017 Score = 138 bits (152), Expect = 4e-28 Identities = 247/357 (69%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 1945 GCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTT 2004 || ||||| || ||||| ||||| ||||||||| ||||| ||||| |||||||||||| Sbjct 437 GCGATGATTGCACTTGATGGTACAGCAAACAAAGCAAAACTAGGTGCAAACGCTATTCTT 378 Query 2005 GGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCT-TGAAGTTCCACTTTACAG 2063 ||||| || || ||||| ||| || || ||||| ||| | || | || |||||| | Sbjct 377 GGTGTTTCAATGGCTGTTGCAAAAGCTGCCGCTGA-TACATCTGGCTTGCCGCTTTACCG 319 Query 2064 CTACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGG 2123 || ||||||| || || ||||||||| ||||||||||||||||| || || Sbjct 318 TTATGTTGGCGGTCCAAATGCTTCTGTTCTTCCAGTGCCAATGATGAACATCATAAATGG 259 Query 2124 TGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGC 2183 || || |||| |||| | |||||||| ||||||||| | || | || || Sbjct 258 CGGCGAACATGCAGATAACCCAAAGGACTTCCAAGAGTTTATGATTATGCCCGTGGGCGC 199 Query 2184 ACCAACATTCA---AAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAA 2240 | || || || || | ||| |||||||||| | ||||| || | || || Sbjct 198 A-GAAAATANNGGGCTGATGCAGTGCGTATGGGTGCTGAAGTTTTCCATACGTTGAAAAA 140 Query 2241 AATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTGACGAAGGTGGTTTCGCACC 2297 | ||| || | || | | | ||| ||| |||||||| |||||||| || || Sbjct 139 AGAACTTCAATCTCAAGGCCATAACACAAACGTTGGTGACGAGGGTGGTTTTGCGCC 83 >seq282620 Length=1293 Score = 118 bits (130), Expect = 3e-22 Identities = 263/388 (68%), Gaps = 5/388 (1%) Strand=Plus/Minus Query 2507 AATTGGTTAACA-AATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGG 2565 |||||| ||| |||| || || || || || ||||||||||||| |||||||||||| Sbjct 1194 AATTGGGTAAATCAATATCCTATTATTACGATAGAAGATGGTATGGCGGAAAACGACTGG 1135 Query 2566 GACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGAC 2625 | |||||| | | || || | | ||| ||| ||||| | || || || Sbjct 1134 GTTGGTTGGTCTGCATTAACAAAAAGCATAGGTCAAAAAATTCAACTAACGGGCGATGAT 1075 Query 2626 TTCTTCGTAACTAACACTGCTTACCTTGAAAA-AGGTATTGCAGAACACGCTGCTAACTC 2684 || || || || || | | | || ||| ||| ||| |||| ||| | | || || || Sbjct 1074 TTATTTGTTACCAATAGT-CGTATTTTGCAAAGAGGCATTGATGAAAAAGTCGCCAATTC 1016 Query 2685 AATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAAT 2744 ||| | || ||| |||| ||||| || || || || ||||| || | || || || | Sbjct 1015 AATTTTAATTAAATTTAATCAAATTGGCACATTAACCGAAACGTTAGCGGCAATAAAATT 956 Query 2745 GGCGAAAGAAGCTGGATACACAGC-AGTAGTATCACACCGTTCAGGTGAAACTGAAGATT 2803 ||| | || ||||| || | || | || || || ||||| ||||||||||| Sbjct 955 GGCACATAGCGCAGGATATCGCGCGACTA-TCTCTCATCGATCAGGGGAAACTGAAGACA 897 Query 2804 CAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGT 2863 | ||||| || || | || ||||| || ||| || || ||||| || ||||| |||| Sbjct 896 CCACAATTGCGGACTTAGCCGTTGCCACAGGCGCGGGGCAGATTAAAACTGGTTCGTTGT 837 Query 2864 CACGTACTGACCGTATTGCTAAATACAA 2891 ||| | || | ||||||||||||| Sbjct 836 GTCGTTCAGATAGGGTTGCTAAATACAA 809 >seq221007 Length=832 Score = 80.6 bits (88), Expect = 8e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2804 CAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGT 2863 |||| || |||||| |||| || ||||| || || || ||||| |||||||||||| Sbjct 6 CAACCATTGCTGATCTTGCTGTAGCAACCAATTGCGGACAGATTAAAACAGGTTCATTGG 65 Query 2864 CACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 | ||| ||||||| | ||||| || |||||| | || || || ||||| Sbjct 66 CGCGTTCTGACCGGTTGGCTAAGTATAACCAACTTCTACGCATTGAAGA 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155503607251104