Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028484.1 Length=11343 Score E Sequences producing significant alignments: (Bits) Value seq250369 100 2e-17 seq42553 84.2 2e-12 >seq250369 Length=726 Score = 100 bits (110), Expect = 2e-17 Identities = 188/270 (70%), Gaps = 5/270 (2%) Strand=Plus/Minus Query 6565 TTGGTAATTGGATTAAAGGCAAAAGAGAGAGAGATTAAGTGGAAAGGACGATTCTTTGCA 6624 || || ||||| || | | ||||||| ||||||| ||| || ||| |||| || || Sbjct 490 TTAGTCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCT 431 Query 6625 CTCATGAGTTGGCGCCTTCGCGAGTACTTTGTATTTACTGAATATTTAATCAA-GAAGAA 6683 || ||| |||| ||||| | ||||||||| | || || ||| | || || ||| | Sbjct 430 CTAATGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACAC 371 Query 6684 TGTGATCCCACTATTCAAAGGATTGACCATGGCGGATGATC-AAACGACTTTGATCAAGA 6742 | || |||| ||||||||||||||||| ||||| |||||| | ||| || | || || Sbjct 370 TTTG-TCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTT-ACCAGGA 313 Query 6743 AGATGATTCAG-AACACAAGTGGACAAGGAGGAAATGATTACAAGCATATAACGTTTGCG 6801 | |||| || || | || || || | |||||| | | || | | || Sbjct 312 AAATGAAAAAGTTACTCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCA 253 Query 6802 AATCACATCGATTACGAAAAGTGGAACAAT 6831 ||| ||||||||||| |||||||||| ||| Sbjct 252 AATTACATCGATTACAAAAAGTGGAATAAT 223 >seq42553 Length=2057 Score = 84.2 bits (92), Expect = 2e-12 Identities = 169/247 (68%), Gaps = 14/247 (6%) Strand=Plus/Minus Query 6586 AAAGAGAGAGAGATTAAGTGGAAAGGACGATTCTTTGCACTCATGAGTTGGCGCCTTCGC 6645 || ||||||||||| || || ||| |||| ||||| |||||| ||| ||||| Sbjct 602 AAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGGGATCTTCGA 543 Query 6646 GAGTACTTTGTATTTACTGAATATTTAATCAAGAAGAATGTGATCCCACTATTCAAAGGA 6705 ||||||||||| | || || || | ||||| || | | |||| | ||||||||| Sbjct 542 GAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTGTTCAAAGGA 483 Query 6706 TTGACCATGGCGGATGATCAAAC-GACTTTGATCAAGAAGATGATTCAGAACACAAGTGG 6764 || || ||||| || |||| || || || | | ||||||||| | || ||| || Sbjct 482 TTAACAATGGCCGACGATCTGACTGAGGTT-ACAAGGAAGATGATGAACAATTCAAACGG 424 Query 6765 ACAAGGAGGAAATGATTACAAGCATATAACGTTTGCGAATCACATCGATTACGAAAAGTG 6824 |||||| ||| ||| ||||| || || ||||||||||| |||||| Sbjct 423 ACAAGGTTCAAA-GAT---CTGCATA--------GCAAAACACATCGATTATACAAAGTG 376 Query 6825 GAACAAT 6831 ||| ||| Sbjct 375 GAATAAT 369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36064918279968