Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq147988 105 9e-18 seq55518 104 3e-17 >seq147988 Length=4520 Score = 105 bits (116), Expect = 9e-18 Identities = 217/317 (68%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 162490 GTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTT 162549 ||||||||| || ||||| ||||| || || | ||||| || || ||||| || Sbjct 2196 GTTCAGGAGGTTCCTCAGAAGGAAACGACGCCTTTTTATCCTCGTAGTCCCTATGGCGTG 2137 Query 162550 GCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCC 162609 || || || |||| | |||| | | | |||| | |||| |||||| || |||| Sbjct 2136 GCCAAGCTCTATGCCTACTGGTCCGTGATTAACTTCCGGGAGGCCTATGATATGTTTGCC 2077 Query 162610 TCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGC 162669 | || || || || || || || || || |||| |||||||||| || ||||| | Sbjct 2076 TGTAATGGGATCCTCTTTAACCATGAGAGTCCACGGAGAGGAGAGAACTTTGTCACGAGG 2017 Query 162670 AAGATCGTCCGAGCCTTGTCCCGAA---TTAGTGTGGGACTCCAA-AGTGATCTACAACT 162725 ||||| | || || ||| | || | ||| |||| |||| | | || | | |||| Sbjct 2016 AAGAT--TACGCGCTCTGTTGCCAAGATTCAGT-TGGGGCTCCTAGATTGCTTTG-AACT 1961 Query 162726 TGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTG 162785 ||||||| | | || ||||| |||||||| ||||| ||||| ||| | | ||||| Sbjct 1960 TGGAAACTTGGACTCCAAGCGTGATTGGGGACATGCCAAGGACTATGTACAAGGAATGTG 1901 Query 162786 GTTGATGCTTCAGCAAG 162802 | | ||| | ||||||| Sbjct 1900 GCTCATGTTGCAGCAAG 1884 >seq55518 Length=4844 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 47109 TATGAATGGATATGGGAGAAGAATAAAGCAACTGGGCACCTAAATGCTAAGAAGATGCCT 47168 ||||||||||| |||||||| | ||| || || || || |||||||| || ||||||||| Sbjct 4488 TATGAATGGATTTGGGAGAAAACTAACGCTACAGGTCATCTAAATGCGAAAAAGATGCCT 4429 Query 47169 ATGAAGGCACACGAGAACATACTAGTATTTTATAGAAAGCTTCCTACATATAACCCACAG 47228 | ||| || ||||| || || | | ||||| | ||| | ||||| ||||| ||||| Sbjct 4428 AGGAAAGCTCACGAAAATGTAATGATTTTTTACAATAAGTTACCTACTTATAATCCACAA 4369 Query 47229 ATGACCACAGGTCATAAGCC 47248 | || ||||| ||||| || Sbjct 4368 AAAACAACAGGACATAAACC 4349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 688964622644160