Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_032907.1 Length=13109 Score E Sequences producing significant alignments: (Bits) Value seq263735 190 2e-44 seq46121 147 2e-31 seq36779 111 1e-20 seq110009 107 2e-19 seq22788 95.1 1e-15 >seq263735 Length=2160 Score = 190 bits (210), Expect = 2e-44 Identities = 737/1139 (65%), Gaps = 42/1139 (4%) Strand=Plus/Plus Query 7675 GGGTCATTCAGACATTGGGGCCATCCATTCCTGGAATACTTGGAAGGACTAAAGAAATTA 7734 || ||||||||||| ||||| || || |||||||| || || |||||||| | || ||| Sbjct 698 GGTTCATTCAGACACTGGGGTCACCCCTTCCTGGATTATTTAGAAGGACTGCAAAAGTTA 757 Query 7735 AGAGAACAAACAACATTACCTAAACAGATAGACACAGACTATGCTAACAAACTGGCAAGT 7794 |||||| || ||||| ||| | || || | ||||| | ||||| || || Sbjct 758 TTTGAACAAGTAAGTTTACCCAAAGAAATTGATGATGCTTATGCACAAAAACTTGCCAGC 817 Query 7795 GACCTAGCATACATCGTTTTGAAGAATCAATTTGACAAGAACAAAAAATGGTTTGTTGAT 7854 |||| ||||||| || |||| || |||| || | | ||||| ||||| ||||||| Sbjct 818 AACCTGGCATACAAAGTACTGAAAAAGAAATTCGATGACACCAAAACATGGTATGTTGAT 877 Query 7855 GTCGATCGTCTCCCTCCTGATCACAAGCTTAGAGATAATATTGTAAACAATACCTGGCCC 7914 | | ||| || |||||| || | | || |||| || ||||| Sbjct 878 CACACCCTTCTTCCCGACGATCACCCTCTCAAACCAGCAATCCAAAACCGAACATGGCC- 936 Query 7915 ACTCCCTTCCAA--ATCAAAGACTTCCAAGATGAGTGGCATCGACTCCCGCTGTCAAAGT 7972 ||||| || || || | ||| | ||||| ||||||| | || || || | Sbjct 937 -CTCCCCTCGAATGATAAGAGAAATGAAAGATAGGTGGCATTTGTTACCATTGATGAAAT 995 Query 7973 GTTTTGAGATTCCAGATGTTGTTGATCCAAGCTTAATTTATGCAGACAAAAGTCATT--C 8030 |||| |||||||| || || |||| |||| |||||| | || || ||||| | | Sbjct 996 GTTTCGAGATTCCGGACACAGTAGATCAAAGCCAAATTTACTCTGATAAGAGTCACTCCC 1055 Query 8031 AGTATGCAGGTCTGAAATT---ATTGAACAT----ATAAAGTCAAACCCTAT-GACACCA 8082 ||| | | || || | |||||| | ||| | ||| || | || | Sbjct 1056 CGTAAATAAAACAGACCTTTTGAGAGAACATCAAGAAAAACTGAAA----ATGGGCAGC- 1110 Query 8083 ATTC-CTTCGAAAAAAGTCTTAGAGACATTTATAAATACTCCTGCTACAAACTGGAAAGA 8141 ||| | ||||| || | || || | || | | ||||||||||| |||||| | Sbjct 1111 -TTCACAACGAAACGCGTGCTTGACACCCTCGTAGACTCACCTGCTACAAATTGGAAACA 1169 Query 8142 ATTCCTAACAGAAGTAAATGACAATGG---GCTAGATATGGAGCATCTTGTAATCGGGCT 8198 ||| | || || ||||||||||| || ||| ||| ||| || || || || Sbjct 1170 ATTTTTGCAGGAGGTTAATGACAATGGCCTGCCCGAT---GAGTCTCTAGTTATAGGACT 1226 Query 8199 GAGAGGAAAGGAAAGAGAAATCAAAAGGATAGGTCGATTCTTCGCTCTTATGTCATGGAA 8258 |||| || || | ||||| || || |||||| |||| || | | ||||||||| Sbjct 1227 CCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGC 1286 Query 8259 GCTGAGAGATTACTTCGTAATTACAGAATATTTAATTAAATTAC-ATTTCGTCCCTCTCT 8317 | | || || || || | || |||| |||||| ||| || ||| ||||| | | Sbjct 1287 CTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTAT 1346 Query 8318 TCTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaaaaaaTGCTCGATACAT 8377 | || |||| ||||| |||||||| | ||| ||| || ||| | ||| | Sbjct 1347 TTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATT 1406 Query 8378 CTAATGGACAAGGGT---TAGA-CGTTTACGACTATATCACAATGGCAAATCATATAGAT 8433 || |||| ||||| | ||| || ||| ||| || || || || || ||| Sbjct 1407 CTGATGGTCAAGGATGCCCAGATTATTCACG----CATCTGTATTGCTAACCACATTGAT 1462 Query 8434 TATGAGAAATGGAATAACCATCAAAGAGGAGAGGCAAACAATCCTGTCTTCACTGTCATG 8493 ||| ||||||||||| || || ||| ||| | ||||| ||| || | || ||| Sbjct 1463 TATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATG 1522 Query 8494 GGTCAGTTTCTAGGATATCCAAGCCTCATAACAAGAACACATGAGTTCTTTGAAAAAAGC 8553 ||||| ||| ||||||| ||||| || ||| | | || ||||| || |||||||||||| Sbjct 1523 GGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGC 1582 Query 8554 TTGATCTATTACAACAACAGAACAGACCTAATGTATGTAAGAGATGGGGTTGTTTTGAAC 8613 | || |||||| | | | || ||||| |||||||| || | ||| Sbjct 1583 CTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACGGAACCCTGCAAAAC 1642 Query 8614 AAAGATGATGACACGCCTGTCTGTTGGAATGGTCAGGCCGGAGGACTAGAGGGGCTGAGA 8673 ||| || | || |||||||| || ||| || || || ||||| || ||| Sbjct 1643 AAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGA 1702 Query 8674 CAAAAAGGCTGGAGTATAGTCAACTTACTGGTAATCAAGA--GAGAGG-GTCGAGTCGAG 8730 || ||||| ||||| || || || ||| | | | || ||| ||||| || || | Sbjct 1703 CAGAAAGGATGGAGCATTGT-AAATTATTTG-ATTCTAGAAGAAGAGGCCTCAAG-AGTA 1759 Query 8731 AACACAAGACTGAGCATTCTGGCCCAAGGAGATAATCAAGTCGTTTGCACTCAATACAA 8789 || || | | | | || | ||||||||||||||||| || |||| ||||| || || Sbjct 1760 AATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTACTCATTATAA 1818 >seq46121 Length=3043 Score = 147 bits (162), Expect = 2e-31 Identities = 399/602 (66%), Gaps = 23/602 (4%) Strand=Plus/Minus Query 8094 AAAAGTCTTAGAGACATTTATAAATACTCCTGCTACAAACTGGAAAGAATTCCTAACAGA 8153 || ||||||| |||| | ||| | | ||||| ||| ||||||||| ||||| |||| Sbjct 1507 AAGAGTCTTAAAGACCCTCATAGACAAACCTGCCACAGTCTGGAAAGACTTCCTC-CAGA 1449 Query 8154 AG-TAAATGACAATGGGCTAGATATGGAGCATCTTGTAATCGGGCTGAGAGGAAAGGAAA 8212 | | |||||| | || || | || ||| || ||||| |||| |||| || Sbjct 1448 GGATTAATGACGAGGGACTTCCTGAAGACTCTCTAGTCATCGGATTGAGGAGAAAAGAGC 1389 Query 8213 GAGAAATCAAAAGGATAGGTCGATTCTTC-GCTCTTATGTCATGGAAGCTGAGAGATTAC 8271 | || | || || | || || || || ||||| ||| | |||||||| || Sbjct 1388 GGGACTTGAAGCGGGTCGGGCGTTTTTTTTGCTCTCATGAC-------CTGAGAGAATAT 1336 Query 8272 TTCGTAATTACAGAATATTTAATTAAATTACATTTCGTCCCTCTCTTCTCCGGATTAACT 8331 ||||| |||| ||||| |||| ||| ||||||||| || || ||| || | ||| Sbjct 1335 TTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGGCCTCACT 1276 Query 8332 ATGGCAGATGATCTAAACACAGTTGTTaaa---aaaaTGCTCGATACATCTAATGGACAA 8388 ||||| ||||| || ||| | || | | || || | ||| || |||| ||| Sbjct 1275 ATGGCGGATGACCT---CACCGAGGTGACACGGAAGGTGTTGAATAATTCAGATGGGCAA 1219 Query 8389 GGGTTAGACGTTTA--CGACTATATCACAATGGCAAATCATATAGATTATGAGAAATGGA 8446 || | | ||| | | || | || || || || ||||| || || ||||||| Sbjct 1218 GGATGTCCAGATTATTCAAGAATTTGC--ATTGCTAACCACATAGACTACGAAAAATGGA 1161 Query 8447 ATAACCATCAAAGAGGAGAGGCAAACAATCCTGTCTTCACTGTCATGGGTCAGTTTCTAG 8506 | ||||||||| | ||| | ||| | | ||||||| || ||||| ||||| | || Sbjct 1160 ACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTTCCAAG 1101 Query 8507 GATATCCAAGCCTCATAACAAGAACACATGAGTTCTTTGAAAAAAGCTTGATCTATTACA 8566 |||| |||| || || || || || ||||| ||||||||||| || || | ||||| Sbjct 1100 GATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGTATTATG 1041 Query 8567 ACAACAGAACAGACCTAATGTATGTAAGAGATGGGGTTGTTTTGAACAAAGATGATGACA 8626 | | ||||| ||||| | |||||||| | | | || || || | |||| Sbjct 1040 TTGGAATACCAGACTTAATGCTCCAACGAGATGGGACTTTAATCAATAAGGA--AAGACA 983 Query 8627 CGCCTGTCTGTTGGAATGGTCAGGCCGGAGGACTAGAGGGGCTGAGACAAAAAGGCTGGA 8686 || |||||| ||||| || || | |||| || || || || || |||| ||||||| Sbjct 982 CG-TTGTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTAAAAGGGCTGGA 924 Query 8687 GT 8688 || Sbjct 923 GT 922 >seq36779 Length=13892 Score = 111 bits (122), Expect = 1e-20 Identities = 435/684 (64%), Gaps = 55/684 (8%) Strand=Plus/Plus Query 8116 AATACTCCTGCTACAAACTGGAAAGAATTCCTAACAGAAGTAAATGACAATGGGCTAGAT 8175 |||| || ||||| |||||||| ||| | | ||| |||||| ||||| | Sbjct 5316 AATAGACCAGCTACTGCGTGGAAAGAGTTCATGCAACGAGTCAATGACCATGGGTTGTCC 5375 Query 8176 ATGGAGCATCTTGTAATCGGGCTGAGAGGAAAGGAAAGAGAAATCAAAAGGATAGGTCGA 8235 ||| |||||| || || || || || || || || || || ||||| ||||| Sbjct 5376 CAGGACTCTCTTGTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGG 5435 Query 8236 TTCTTCGCTCTTATGTCATGGAAGCTGAGAGATTACTTCGTAATTACAGAATATTTAATT 8295 || || || |||||||| ||| || || |||| |||||||| |||||||||||| | || Sbjct 5436 TTTTTAGCACTTATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATC 5495 Query 8296 AAATTACATTTCGTCCCTCTCTTCTCCGGATTAACTATGGCAGATGATCTAAACACAGTT 8355 || || || ||||| | || || | |||||||| ||||| Sbjct 5496 AAGGAGCACTTTGTCCCATTATTTAAGGGTCTGACTATGGCCGATGA------------- 5542 Query 8356 GTTaaaaaaaTGCTCGATACATCTAATGGACAAGGGT---TAGACGTTTACGACTATATC 8412 ||| ||| || |||||||||||| |||| | ||| | | ||| Sbjct 5543 ------------CTCAATAACTCCGATGGACAAGGGTGTCCAGAC-TATACTA--AAATC 5587 Query 8413 ACAATGGCAAATCATATAGATTATGAGAAATGGAATAACCATCAAAGAGGAGAGGCAAAC 8472 | || |||||||| || ||||| |||||||| |||||| | ||| | Sbjct 5588 TGTGTAGCGAATCATATCGACTATGAAAAATGGAACAACCAT--------AACTCCAATC 5639 Query 8473 AATCCTGTCTTCACTGTCATGGGTCAGTTTCTAGGATATCCAAGCCTCATAACAAGAACA 8532 ||| ||| ||| ||||||||| |||||| | || || || || || | | || Sbjct 5640 AAT-ATGTATTCCGTGTCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACC 5698 Query 8533 CATGAGTTCTTTGAAAAAAGCTTGATCTATTACAACAACAGAACAGACCTAATGTATGTA 8592 ||||| |||||||| ||||| || || |||||| | | | || || ||| | Sbjct 5699 CATGAATTCTTTGAGAAAAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATGATCCAA 5758 Query 8593 AGAGATGGGGTTGTTTTGAACAAAGATGATGACACGCCTGTCTGTTGGAATGGTCAGGCC 8652 ||||| | | | ||| ||||| || | ||| || ||||| || ||||| Sbjct 5759 AGAGAAGACACCTTCCTCAAC-AAGAT--TGGAGAGATTGTTTGCTGGAACGGACAGGCT 5815 Query 8653 GGAGGACTAGAGGGGCTGAGACAAAAAGGCTGGAGTATAGTCAA------CTTACTGGTA 8706 || || || |||||||| | || || || ||||| | | || | | |||| Sbjct 5816 GGTGGTCTGGAGGGGCTCTGCCAGAAGGGATGGAGCGTTCTGAATTATCTCATTCTGG-- 5873 Query 8707 ATCAAGAGAGAGGGTCGAGTCGAGAACACAAGACTGAGCATTCTGGCCCAAGGAGATAAT 8766 || | ||| || | || | || || | ||| | | |||||||||||||||||| Sbjct 5874 ATGATGAGTCAGAGAAGA----AAAATACCAATGTGAACGTCCTGGCCCAAGGAGATAAT 5929 Query 8767 CAAGTCGTTTGCACTCAATACAAA 8790 || ||| |||| || || |||||| Sbjct 5930 CAGGTCATTTGTACCCACTACAAA 5953 >seq110009 Length=642 Score = 107 bits (118), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 8120 CTCCTGCTACAAACTGGAAAGAATTCCTAACAGAAGTAAATGACAATGGGCT---AGATA 8176 ||||||| ||||| |||| | |||| || ||||||||| |||||||| || |||| Sbjct 309 CTCCTGCCACAAATTGGAGACAATTTTTACAAGAAGTAAACGACAATGGTCTGCCAGAT- 367 Query 8177 TGGAGCATCTTGTAATCGGGCTGAGAGGAAAGGAAAGAGAAATCAAAAGGATAGGTCGAT 8236 ||| ||||||||| || || | || || || | || || ||||||||||| ||| Sbjct 368 --GAGTCTCTTGTAATAGGACTCCGTGGTAAAGAGCGCGAGATGAAAAGGATAGGAAGAT 425 Query 8237 TCTTCGCTCTTATGTCATGGAAGCTGAGAGATTACTTCGTAATTACAGAATATTTAATTA 8296 ||||||| || ||||| ||| || |||| || || || | || |||| || || | Sbjct 426 TCTTCGCCCTAATGTCCTGGGCCTTGCGAGAATATTTTGTTTTGACCGAATTATTGATAA 485 Query 8297 AATTACATTTCGTCCCTCTCTTCTCCGGATTAACTATGGCAGATGATCT 8345 || ||| || ||| | || ||| |||| ||||| |||||||| Sbjct 486 AAAACTTTTTTGTTCCTTTATTTGATGGACTAACAATGGCCGATGATCT 534 >seq22788 Length=2006 Score = 95.1 bits (104), Expect = 1e-15 Identities = 228/337 (68%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 8125 GCTACAAACTGGAAAGAATTCCTAACAGAAGTAAATGACAATGGGCTAGATATGGAGCAT 8184 ||||| || ||||| || ||||| ||| | |||||||| || |||| || || Sbjct 1870 GCTACGAATTGGAAGGAGTTCCTTCAAGACATCAATGACAACGGCTTAGAC---GAAAAT 1814 Query 8185 --CTTG-TAATCGGGCTGAGAGGAAAGGAAAGAGAAATCAAAAGGATAGGTCGATTCTTC 8241 |||| | ||||| || ||||| || ||| ||||||| || ||||| || ||| ||| Sbjct 1813 TACTTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTC 1754 Query 8242 GCTCTTATGTCATGGAAGCTGAGAGATTACTTCGTAATTACAGAATATTTAATTAAATTA 8301 || | ||||||||||| || | || ||||| || || ||||| ||| | || || Sbjct 1753 GCCTTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAG 1694 Query 8302 CATTTCGTCCCTCTCTTCTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaa 8361 ||| || || | ||| || |||| ||||| || ||||||| | || | ||| Sbjct 1693 TATTATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAA 1634 Query 8362 aaaaTGCTCGATACA-TCTAATGGACAAGGGTTAGACGTTTACGACTATA-TCACAATGG 8419 || ||| | || || || |||| ||||| | | | ||| || | | || || | Sbjct 1633 AAGATGAT-GAACCATTCAGATGGTCAAGGATGTGCAGACTAC-ACCAGAGTCTGCATAG 1576 Query 8420 CAAATCATATAGATTATGAGAAATGGAATAACCATCA 8456 | || ||||||||||| || ||||| ||||| || Sbjct 1575 CGAACCATATAGATTACACCAAGTGGAACAACCACCA 1539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41690806830976