Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_033006.1 Length=11332 Score E Sequences producing significant alignments: (Bits) Value seq263735 123 2e-24 >seq263735 Length=2160 Score = 123 bits (136), Expect = 2e-24 Identities = 248/364 (68%), Gaps = 3/364 (1%) Strand=Plus/Plus Query 6380 TTATAGGATTAAAAGAGAAGGAAAGAGAACTAAAGGAGGAT-GGTAGATTCTACTGCCTA 6438 |||||||| | || || || | ||| | ||| || || |||||||| | | || Sbjct 1217 TTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAG-AGAATAGGTAGATTTTTTACCTTA 1275 Query 6439 ATGTCCTGGGCCTTGAGGGAATATTTTGTCGTCACTGAGTATTTGATTAAATTACATTTT 6498 ||||| |||||||| | || |||||||| | || || | ||| || ||| || |||| Sbjct 1276 ATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTT 1335 Query 6499 ATTCCTCTT-TTTAAGGGTCTGACTGTCGCTGATGACATGACAACACTAATCAAGAAGAT 6557 ||| || ||| | | || || | |||||||| | || | ||| |||||||| Sbjct 1336 TGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGAT 1395 Query 6558 GATGGATAATTCTTCAGGACAAGGATTAGATGATTATTCCAGAGTTTCTTATGCGAACCA 6617 |||| |||||||| || ||||||| |||||||| | | | | ||| ||||| Sbjct 1396 GATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAACCA 1455 Query 6618 TTTAGATTATGAGAAGTGGAATAACTATCAGCGTATAGAATCCAACGGGCCTACATTCAG 6677 | |||||| || |||||||| | ||| | | || |||||| | | ||| || Sbjct 1456 CATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAG 1515 Query 6678 AGTAATGGGACAGTTTTTGGGTTATCCTAACCTAATATACAGAACTCATGAATTCTTTCA 6737 ||| ||||| || ||||| || || || | || ||| | | ||||||||||| ||| | Sbjct 1516 AGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGA 1575 Query 6738 AAAA 6741 |||| Sbjct 1576 AAAA 1579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36029832571904