Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_033034.1 Length=13000 Score E Sequences producing significant alignments: (Bits) Value seq263735 172 5e-39 seq36779 102 7e-18 seq110009 86.0 5e-13 >seq263735 Length=2160 Score = 172 bits (190), Expect = 5e-39 Identities = 452/672 (67%), Gaps = 26/672 (4%) Strand=Plus/Plus Query 7937 ACCCGCTACTGACTGGAAAGAATTTTTAAAAGCAATTAATGATGTCGGATTATCCTGGGA 7996 ||| ||||| | |||||| ||||||| | | ||||||| || | || || Sbjct 1149 ACCTGCTACAAATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGCCC---GA 1205 Query 7997 TGATT---TGGTCATCGGACTGAAAGAAAAGGAGCGGGAATTGAAAACAGCAGGACGTTT 8053 ||| | | || || ||||| || || ||||||||| |||| | | ||| | || Sbjct 1206 TGAGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATT 1265 Query 8054 CTTTTCATTAATGTCTTGGAAGCTGAGAGAATATTTTGTAATAACTGAATATCTCATAAA 8113 ||| | |||||||| ||| | | || |||||||| | || |||| | | ||||| Sbjct 1266 TTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAA 1325 Query 8114 AAC-CTTTTATGTCCCTCTTTTTTATGGATTAACAATGGCTGATGA-CTTAGTTACTGTT 8171 || ||||| |||||| | ||| || || |||| ||||||||||| || | | | || Sbjct 1326 AAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAA-GTA 1384 Query 8172 ATGAGAAAAATGCTCGAAACATCATCTGGACAAGGATTGGATAATTATGATGTGATCTAT 8231 | | || ||| | | | || ||| ||||||| ||||| |||| | Sbjct 1385 ACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGT 1444 Query 8232 TTGGCCAATCACATCGATTATGAGAAATGGAATAACCACCAACGACAAGCCTCGA-CTGG 8290 | || || ||||| |||||| ||||||||||| ||||| || | | || | | | Sbjct 1445 ATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAG 1504 Query 8291 TCCTGTATTTAAGGTGATGGGACAATTCTTGGGTTACCCTAATTTAATTTACAGAACACA 8350 | |||||||| |||||||| ||||| || || ||||| | | | || | | || || Sbjct 1505 TA-TGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCA 1563 Query 8351 CGAATTTTTTGAGAAAAGCCTGATTTATTATGGATATTATCCAGAATTATTGAGTGTTGT 8410 ||||||||||| |||||||| |||||||| | | ||| || ||| || || || Sbjct 1564 TGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATG---GTCGT 1620 Query 8411 AAATG--GGGAAGTTGCAAA--TAATTCTGATAAACGA--GTGTGCTGGAATGGCCAGGC 8464 || | || | |||||| || | | || || ||||| ||||| |||||| Sbjct 1621 AAGAGACGGAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAA 1680 Query 8465 AGGAGGGCTGGAAGGGTTACGTCAGAAGGGATGGAGCATTTTAAACTTATTGGTAATTAG 8524 ||| |||||||| || | | ||||| |||||||||||| |||| ||||| | ||| Sbjct 1681 AGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAA-TTATTTGATTCTAG 1739 Query 8525 GAGAGAAGGAGCTCA--TCGAAATACACAAGTGAGATG-TCTAGCTCAAGGAGACAATCA 8581 ||| ||| |||| |||||| |||| | ||| | |||| |||||||| ||||| Sbjct 1740 AAGAAGAGG-CCTCAAGAGTAAATACCAAAGT-AAATGTTTTAGCCCAAGGAGATAATCA 1797 Query 8582 GGTTATCTGCAC 8593 |||||| || || Sbjct 1798 GGTTATTTGTAC 1809 >seq36779 Length=13892 Score = 102 bits (112), Expect = 7e-18 Identities = 437/683 (64%), Gaps = 66/683 (10%) Strand=Plus/Plus Query 7937 ACCCGCTACTGACTGGAAAGAATTTTTAAAAGCAATTAATGATGTCGGATTATCCTGGGA 7996 ||| ||||||| |||||||| || | || | | ||||| || || ||| ||| Sbjct 5321 ACCAGCTACTGCGTGGAAAGAGTTCATGCAACGAGTCAATGACCATGGGTTGTCCCAGGA 5380 Query 7997 TGATTTGGTCATCGGACTGAAAGAAAAGGAGCGGGAATTGAAAACAGCAGGACGTTTCTT 8056 | | ||||| ||||| | | || ||| |||| |||||| ||| || || || || Sbjct 5381 CTCTCTTGTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTT 5440 Query 8057 TTCATTAATGTCTTGGAAGCTGAGAGAATATTTTGTAATAACTGAATATCTCATAAAA-A 8115 || | ||||| ||| || || ||||||| || || || || |||||||| || || | Sbjct 5441 AGCACTTATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGA 5500 Query 8116 CCTTTTATGTCCCTCTTTTTTATGGATTAACAATGGCTGATGACTTAGTTACTGTTATGA 8175 | || |||||| | ||| | || | || ||||| ||||||| | | ||| Sbjct 5501 GCACTT-TGTCCCATTATTTAAGGGTCTGACTATGGCCGATGACTCAATAACTC------ 5553 Query 8176 GAAAAATGCTCGAAACATCATCTGGACAAGGATTGGATAATTATGATGTGATCTATTTGG 8235 ||| ||||||||| | | ||| | |||| | | | Sbjct 5554 ----------CGA---------TGGACAAGGGTGTCCAGACTATACTAAAATCTGTGTAG 5594 Query 8236 CCAATCACATCGATTATGAGAAATGGAATAACCACCAACGACAAGCCTCGACTGGTCCTG 8295 | ||||| ||||| ||||| |||||||| ||||| ||| ||| | | | || Sbjct 5595 CGAATCATATCGACTATGAAAAATGGAACAACCAT-AACTCCAATC----AATA----TG 5645 Query 8296 TATTTAAGGTGATGGGACAATTCTTGGGTTACCCTAATTTAATTTACAGAACACACGAAT 8355 |||| || ||||| || || |||||||||||| || ||||| | | || || |||| Sbjct 5646 TATTCCGTGTCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAAT 5705 Query 8356 TTTTTGAGAAAAGCCTGATTTATTATGGATATTATCCAGAATTATTGAGTGTTGTAAATG 8415 | ||||||||||| | |||||||| | | ||| || ||| || | ||| Sbjct 5706 TCTTTGAGAAAAGTTTAATTTATTACGTCGGTCGTCCCGA---TCTGA-TGATCCAAA-- 5759 Query 8416 GGGAAG-----TTGC-AAATAATTCTGATAAACGAGTGTGCTGGAATGGCCAGGCAGGAG 8469 | |||| || | || || || | || |||||||| || ||||| || | Sbjct 5760 GAGAAGACACCTTCCTCAACAAGATTGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTG 5819 Query 8470 GGCTGGAAGGGTTACGTCAGAAGGGATGGAGCATTTTAAA----CTTATT---GGTAATT 8522 | ||||| ||| | | ||||||||||||||| || | || || ||| | | || Sbjct 5820 GTCTGGAGGGGCTCTGCCAGAAGGGATGGAGCGTTCTGAATTATCTCATTCTGGATGATG 5879 Query 8523 AG-GAGAGAAGGAGCTCATCGAAATACACAAGTGAGATGT-CTAGCTCAAGGAGACAATC 8580 || ||||||| | |||||| | |||| | || || || |||||||| |||| Sbjct 5880 AGTCAGAGAAGAA--------AAATACCAATGTGA-ACGTCCTGGCCCAAGGAGATAATC 5930 Query 8581 AGGTTATCTGCACCTTATACAAA 8603 |||| || || ||| |||||| Sbjct 5931 AGGTCATTTGTACCCACTACAAA 5953 >seq110009 Length=642 Score = 86.0 bits (94), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 8022 AAGGAGCGGGAATTGAAAACAGCAGGACGTTTCTTTTCATTAATGTCTTGGAAGCTGAGA 8081 || ||||| || |||||| |||| | ||||| | ||||||| ||| || || Sbjct 395 AAAGAGCGCGAGATGAAAAGGATAGGAAGATTCTTCGCCCTAATGTCCTGGGCCTTGCGA 454 Query 8082 GAATATTTTGTAATAACTGAATATCTCATAAAAACCTTTTATGTCCCTCTTTTTTATGGA 8141 ||||||||||| | || |||| | ||||||| ||||| ||| ||| | ||| ||||| Sbjct 455 GAATATTTTGTTTTGACCGAATTATTGATAAAAAACTTTTTTGTTCCTTTATTTGATGGA 514 Query 8142 TTAACAATGGCTGATGA-CTTA 8162 |||||||||| ||||| |||| Sbjct 515 CTAACAATGGCCGATGATCTTA 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41350101758336