Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_033070.1 Length=11145 Score E Sequences producing significant alignments: (Bits) Value seq46121 105 5e-19 seq250369 104 2e-18 seq22788 95.1 9e-16 seq36779 93.3 3e-15 >seq46121 Length=3043 Score = 105 bits (116), Expect = 5e-19 Identities = 211/307 (69%), Gaps = 8/307 (3%) Strand=Plus/Minus Query 6286 AGAGATTATTTTGTGATGACAGAGTATCTTATCAAAACACACTTTGTACCTCTGTTCAAA 6345 ||||| ||||| || | || || || || |||||| ||| || || || |||||| || Sbjct 1344 AGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAA 1285 Query 6346 GGTCTGACAATGGCAGACGATTTGACAACTGTAATCGGAAAAATTTTAGAGAATACAGAG 6405 || || || ||||| || || | || || | | || | || | ||| |||| Sbjct 1284 GGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAGAT 1225 Query 6406 GGACAAGGAGAAACAGGGTATG--AGAATAT-CACGGTTTCAAACCATATAGATTACGAG 6462 || |||||| ||| ||| ||||| | || || | ||||| ||||| ||||| Sbjct 1224 GGGCAAGGATGTCCAGATTATTCAAGAATTTGCA---TTGCTAACCACATAGACTACGAA 1168 Query 6463 AAATGGAACAACCACCAAAGGAAAGAGGCCAATAATCCTGTGTTTGATGTAATGGGGAAA 6522 |||||||||||||| ||| ||||||| |||| | | ||| || | || ||||| | Sbjct 1167 AAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAG 1108 Query 6523 TTCCTTGGCTACCCCAACCTTATCTCACGTACCCATGAAATATTCGAAAAG-TCCTGGAT 6581 |||| || ||||| || || ||| | | || ||||| | || |||||| |||| | Sbjct 1107 TTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGG-T 1049 Query 6582 GTATTAT 6588 ||||||| Sbjct 1048 GTATTAT 1042 >seq250369 Length=726 Score = 104 bits (114), Expect = 2e-18 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 6212 TCATTGGATTAAGAGCAAAAGAGCGAGAACTTAAAGAAGAAGGAAGGTTCTTTGCACTTA 6271 ||||||| || |||| ||||||| |||| | || | ||||| || || || || | Sbjct 486 TCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAA 427 Query 6272 TGTCTTGGGAAATCAGAGATTATTTTGTGATGACAGAGTATCTTATCAAAACACACTTTG 6331 |||||||||| | | | || |||||| | ||||||||||| || ||| |||||||| Sbjct 426 TGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTTG 367 Query 6332 TACCTCTGTTCAAAGGTCTGACAATGGCAGACGATTTGAC 6371 | || || |||||||| |||||||||| | ||| |||| Sbjct 366 TCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGAC 327 >seq22788 Length=2006 Score = 95.1 bits (104), Expect = 9e-16 Identities = 217/321 (68%), Gaps = 8/321 (2%) Strand=Plus/Minus Query 6181 AATGACACAGGTATATCAGAAGATCATCTGATCATTGGATTAAGAGCAAAAGAGCGAGAA 6240 ||||||| || || ||| || | || | || ||| |||||| ||||| |||||| Sbjct 1837 AATGACAACGGCTTAGACGAAAATTACTTGGTTATCGGACTAAGAGGGAAAGAACGAGAA 1778 Query 6241 CTTAAAGAAGAA-GGAAGGTTCTTTGCACTTATGTCTTGGGAAATCAGAGATTATTTTGT 6299 | || || || ||||| | || || | ||||| ||| || || | || || ||||| Sbjct 1777 ATGAA-GAGGATCGGAAGATATTTCGCCTTAATGTCATGGAAACTCCGTGAGTACTTTGT 1719 Query 6300 GATGACAGAGTATCTTATCAAAACACACTTTGTACCTCTGTTCAAAGGTCTGACAATGGC 6359 ||| ||||||||||| ||||| | | | ||| || | ||||| || || |||||||| Sbjct 1718 GATCACAGAGTATCTGATCAAGAAGTATTATGTTCCGTTATTCAAGGGGCTAACAATGGC 1659 Query 6360 AGACGATTTGACAACTGTAATCGGAAAAATTTTAGAGAATACAGAGGGACAAGGAGAAAC 6419 |||||| | || || || ||| || | | || |||| || |||||| | Sbjct 1658 TGACGATCTAACCGAGGTGATGAAAAAGATGATGAACCATTCAGATGGTCAAGGATGTGC 1599 Query 6420 AGGGT--ATGAGAATAT-CACGGTTTCAAACCATATAGATTACGAGAAATGGAACAACCA 6476 || | | ||| | | || | | ||||||||||||||| || ||||||||||| Sbjct 1598 AGACTACACCAGAGTCTGCA---TAGCGAACCATATAGATTACACCAAGTGGAACAACCA 1542 Query 6477 CCAAAGGAAAGAGGCCAATAA 6497 ||| ||| | | |||| || Sbjct 1541 CCAGCGGATGGCGTCCAACAA 1521 >seq36779 Length=13892 Score = 93.3 bits (102), Expect = 3e-15 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6212 TCATTGGATTAAGAGCAAAAGAGCGAGAACTTAAAGAAGAAGGAAGGTTCTTTGCACTTA 6271 |||||||| | || | |||||| | || | ||| || || |||| || ||||||| Sbjct 5389 TCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTA 5448 Query 6272 TGTCTTGGGAAATCAGAGATTATTTTGTGATGACAGAGTATCTTATCAAAACACACTTTG 6331 |||| ||||| | |||| || || ||||| ||||| ||||||||||| ||||||| Sbjct 5449 TGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTG 5508 Query 6332 TACCTCTGTTCAAAGGTCTGACAATGGCAGACGA 6365 | || | || || |||||||| ||||| || || Sbjct 5509 TCCCATTATTTAAGGGTCTGACTATGGCCGATGA 5542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35433375534816