Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_033103.1 Length=13161 Score E Sequences producing significant alignments: (Bits) Value seq263735 161 8e-36 seq250369 114 1e-21 seq42553 105 6e-19 seq110009 96.9 3e-16 seq36779 96.9 3e-16 >seq263735 Length=2160 Score = 161 bits (178), Expect = 8e-36 Identities = 353/519 (68%), Gaps = 16/519 (3%) Strand=Plus/Plus Query 8140 CTTGTCATCGGTCTCAAAGAAAAGGAGCGAGAAATAAAAAAGAAGGGACGGTTTTTCTCA 8199 || || || || ||| || || ||||| ||||| || | | || | ||||| | Sbjct 1213 CTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACC 1272 Query 8200 TTGATGTCCTGGAGTCTT-CGAGATTATTTTGTGGTGACTGAGTATTTAATAAAGAAACA 8258 || ||||| ||| | ||| || || ||||||||| |||| || | ||||||||| |||| Sbjct 1273 TTAATGTCATGG-GCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACT 1331 Query 8259 CTTT-GTTCCACTATTCTATGGTCTGACAATGGCCGATGATCTCACGACCGTGATGAGGA 8317 ||| || || |||| || | || || ||||| ||||||||||| || | | || Sbjct 1332 TTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGA 1391 Query 8318 AGATGATGGAGAATGCAAATGGACAGGGT---CTGGATGATTATAGCTATATTTCTATTG 8374 |||||||| | ||| | |||| || || | ||| ||| || || | ||||| Sbjct 1392 AGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGC---ATCTGTATTG 1448 Query 8375 CTAATCACATTGATTATGAGAAGTGGAATAATCACCAACGGTTGGAATCAACCGGACCTG 8434 |||| |||||||||||| || |||||||||||||| | ||| || | | || Sbjct 1449 CTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATG 1508 Query 8435 TGTTTCGTGTAATGGGACAATTCTTAGGTTATCCAAATTTGATCTATAGGACACATGAGT 8494 | ||| | || ||||| ||||| ||||| || |||| | |||| | |||| ||||| | Sbjct 1509 TATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAAT 1568 Query 8495 TCTTTCAACAATCTCTGATCTACCATGGAGGTCGAGGGGATTTAATGACAGTCAGAGATG 8554 | ||| || || || || || | | || || |||||||||| || ||||| Sbjct 1569 TTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGA-C 1627 Query 8555 GGAAAATTGTGAATTCAGGATCC----ACACGT-GTGTGTTGGGAGGGACAAGCCGGTGG 8609 |||| || || || | || ||| | ||||||||| |||| || ||||| Sbjct 1628 GGAACCCTG-CAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGG 1686 Query 8610 TCTAGAGGGGCTTAGACAAAAGGGATGGAGTATACTAAA 8648 || ||||| || ||||| || |||||||| || |||| Sbjct 1687 GCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAA 1725 >seq250369 Length=726 Score = 114 bits (126), Expect = 1e-21 Identities = 256/379 (68%), Gaps = 13/379 (3%) Strand=Plus/Minus Query 8052 AGTCCTGACCACCTTACTGCATTCTGATACGACGGATTGGAAAGCTTTTCTGGAGAGAGT 8111 ||| ||| ||| || || | || ||| |||| | ||||||| ||||||| || | || Sbjct 578 AGTTCTGGACACTCTAGTGGACTCGGATGCGACTGTCTGGAAAGATTTTCTGCAGTGTGT 519 Query 8112 AGACAAATATGGATTAGATCTGA---ATGAG--CTT-GTCATCGGTCTCAAAGAAAAGGA 8165 ||| ||| | | ||| |||| ||| ||||| || | | || ||| || Sbjct 518 ---CAATGATGAA---GGTCTCCCCGATGACTCCTTAGTCATTGGGTTGAGAGGAAAAGA 465 Query 8166 GCGAGAAATAAAAAAGAAGGGACGGTTTTTCTCATTGATGTCCTGGAGTCTTCGAGATTA 8225 | |||| || || | | ||| | |||||| | | ||||| ||| |||||| | || Sbjct 464 GGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAATGTCTTGGGATCTTCGGGTGTA 405 Query 8226 TTTTGTGGTGACTGAGTATTTAATAAAGAAACACTTTGTTCCACTATTCTATGGTCTGAC 8285 |||||| | || |||||| | || || |||||||||| || |||||| | || |||| Sbjct 404 CTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTTGTCCCCCTATTCAAAGGATTGAC 345 Query 8286 AATGGCCGATGATCTCACGACCGTGATGAGGAAGATGATGGAG-AATGCAAATGGACAGG 8344 ||||||| ||||||| || || | ||||| |||| || | | | || |||| Sbjct 344 AATGGCCAATGATCTGACCGAAGTTACCAGGAAAATGAAAAAGTTACTCGGACGGGCAGG 285 Query 8345 GTCTGGATGATTATAGCTATATTTCTATTGCTAATCACATTGATTATGAGAAGTGGAATA 8404 || ||||| | || ||||| || ||| |||| ||||| | |||||||||| Sbjct 284 GTTGTCCCGATTACTCGAAGATCTCTATAGCAAATTACATCGATTACAAAAAGTGGAATA 225 Query 8405 ATCACCAACGGTTGGAATC 8423 |||| |||||| ||| || Sbjct 224 ATCATCAACGGAAGGAGTC 206 >seq42553 Length=2057 Score = 105 bits (116), Expect = 6e-19 Identities = 174/252 (69%), Gaps = 12/252 (5%) Strand=Plus/Minus Query 8161 AAGGAGCGAGAAATAAAAAAGAAGGGACGGTTTTTCTCATTGATGTCCTGGAGTCTTCGA 8220 |||||| |||| || |||| | ||| | ||||| | | ||||||||| ||||||| Sbjct 602 AAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGGGATCTTCGA 543 Query 8221 GATTATTTTGTGGTGACTGAGTATTTAATAAAGAAACACTTTGTTCCACTATTCTATGGT 8280 || || ||||| | || ||||| | || || | ||||| || || | ||| | || Sbjct 542 GAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTGTTCAAAGGA 483 Query 8281 CTGACAATGGCCGATGATCTCACGACCGTGATGAGGAAGATGATGGAGAATGCAAATGGA 8340 | ||||||||||| ||||| || || | |||||||||||| | ||| |||| ||| Sbjct 482 TTAACAATGGCCGACGATCTGACTGAGGTTACAAGGAAGATGATGAACAATTCAAACGGA 423 Query 8341 CAGGGTCTGGATGATTATAGCTATATTTCTATTGCTAATCACATTGATTATGAGAAGTGG 8400 || ||| | | || || | || || || ||||| |||||| |||||| Sbjct 422 CAAGGT--------TCAAAG----ATCTGCATAGCAAAACACATCGATTATACAAAGTGG 375 Query 8401 AATAATCACCAA 8412 |||||||| ||| Sbjct 374 AATAATCATCAA 363 >seq110009 Length=642 Score = 96.9 bits (106), Expect = 3e-16 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 8140 CTTGTCATCGGTCTCAAAGAAAAGGAGCGAGAAATAAAAAAGAAGGGACGGTTTTTCTCA 8199 ||||| || || ||| | || ||||| || || |||| || ||| | || ||| | Sbjct 374 CTTGTAATAGGACTCCGTGGTAAAGAGCGCGAGATGAAAAGGATAGGAAGATTCTTCGCC 433 Query 8200 TTGATGTCCTGGAGTCTT-CGAGATTATTTTGTGGTGACTGAGTATTTAATAAAGAAACA 8258 | ||||||||| | ||| ||||| |||||||| |||| || | || ||||| || Sbjct 434 CTAATGTCCTGG-GCCTTGCGAGAATATTTTGTTTTGACCGAATTATTGATAAAAAACTT 492 Query 8259 CTTTGTTCCACTATTCTATGGTCTGACAATGGCCGATGATCTCACGACCGTGATGAGGAA 8318 |||||||| |||| |||| || ||||||||||||||||| || || | || ||| Sbjct 493 TTTTGTTCCTTTATTTGATGGACTAACAATGGCCGATGATCTTACTGAGGTCACGAAGAA 552 Query 8319 GATGATG 8325 ||||||| Sbjct 553 GATGATG 559 >seq36779 Length=13892 Score = 96.9 bits (106), Expect = 3e-16 Identities = 122/164 (74%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 8140 CTTGTCATCGGTCTCAAAGAAAAGGAGCGAGAAATAAAAAAGAAGGGACGGTTTTTCTCA 8199 |||||||| || |||| | || ||| | || || |||| ||| |||||||| || Sbjct 5385 CTTGTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCA 5444 Query 8200 TTGATGTCCTGG-AGTCTTCGAGATTATTTTGTGGTGACTGAGTATTTAATAAAGAAACA 8258 | ||||||||| ||| | ||||| || || ||| | || || ||| | || ||| | || Sbjct 5445 CTTATGTCCTGGGAGT-TGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCA 5503 Query 8259 CTTTGTTCCACTATTCTATGGTCTGACAATGGCCGATGATCTCA 8302 |||||| ||| |||| | |||||||| ||||||||||| |||| Sbjct 5504 CTTTGTCCCATTATTTAAGGGTCTGACTATGGCCGATGA-CTCA 5546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41856651533792