Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_033701.1 Length=11743 Score E Sequences producing significant alignments: (Bits) Value seq263735 113 3e-21 seq42553 105 5e-19 seq250369 93.3 3e-15 seq22788 89.7 4e-14 seq110009 86.0 5e-13 >seq263735 Length=2160 Score = 113 bits (124), Expect = 3e-21 Identities = 406/618 (66%), Gaps = 24/618 (4%) Strand=Plus/Plus Query 6699 TCTGGTCATTGGACTGAAGGGAAAAGAGAGAGAAGTTAAAAGGATTGGTCGAtttttttC 6758 ||| || || ||||| || |||||| | ||| | || || || ||| |||||||| | Sbjct 1212 TCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTAC 1271 Query 6759 ACTAATGTCTTGGGAACTACGAATGTACTTTGTAGTAACGGAATACTTGATTAAAAAG-T 6817 ||||||| |||| |||| ||| ||||| | || |||| || || ||||| | Sbjct 1272 CTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACT 1331 Query 6818 TTTTTGTACCTTTGTTCTCAGGTTTAACAATGGCCGACGATTACAATTCAGTAATTAAGA 6877 ||||||| || || || | |||| ||||| || ||| || | ||||| ||||| Sbjct 1332 TTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGA 1391 Query 6878 AAATGTTGGACCGGGCGACAGGTCAAGGTGAATCTGATTAC-CA-GTATATAACATTTGC 6935 | ||| || | | |||||||| | ||||| || | || | |||| Sbjct 1392 AGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTA--TTGC 1449 Query 6936 AAATCATTTTGACTATTCGAAATGGAACAATACTCAACGAGGGGCTGCCAATGACCCAGT 6995 || || |||| ||| | |||||||| ||| || || || |||| | || Sbjct 1450 TAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGT 1509 Query 6996 CTTCCTTGTCATGGGTAAATTTTTAGGACTACCGAAA-CTCTTTGTAAGAACCCACGAGT 7054 || || |||||| ||||||||||| |||| || || | | | | || || || | Sbjct 1510 ATTTAGAGTGATGGGTCAATTTTTAGGA-TACCCAAGTCTGATAGAACGGACTCATGAAT 1568 Query 7055 TTTTTGAGAAGAGCTGGATTTACTATAACGATCGAGGAGATTTAATTTCTGTGCAGGATG 7114 ||||||| || ||| ||||| || | || |||||||| || || | Sbjct 1569 TTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACG 1628 Query 7115 ATTGCTTGACCAACAAAACTG-AGAAAAGA--GTTTGTTGGATTGGTCAAAAGGGAGGCC 7171 | || |||||||| |||| ||| || ||||||| || || || || || | Sbjct 1629 GAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGC 1688 Query 7172 TAGAGGGATTAAGACAAAAAGGATGGAGCATTGTAAGTTTGCTTATGATT-GAGAGAGAA 7230 | |||||| | ||||| ||||||||||||||||||| || | ||||| ||| |||| Sbjct 1689 TGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAATT---ATTTGATTCTAGA-AGAA 1744 Query 7231 -AG----CAAGATCCGT-AATACCCTAATCAAAGTCCTAGCACAAGGAGATAATCAAGTG 7284 || ||||| || |||||| | | || || |||| |||||||||||||| || Sbjct 1745 GAGGCCTCAAGA---GTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTT 1801 Query 7285 ATCTGCTCATATTATAAG 7302 || || | |||||||| Sbjct 1802 ATTTGTACTCATTATAAG 1819 >seq42553 Length=2057 Score = 105 bits (116), Expect = 5e-19 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 6713 TGAAGGGAAAAGAGAGAGAAGTTAAAAGGATTGGTCGAtttttttCACTAATGTCTTGGG 6772 ||| ||| || |||||||| | |||||| |||| |||||||| | || ||||| |||| Sbjct 610 TGAGGGGGAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGGG 551 Query 6773 AACTACGAATGTACTTTGTAGTAACGGAATACTTGATTAAAAAGTTTTTTGTACCTTTGT 6832 | || ||| ||||||||| | || || ||| | || ||| || || || || |||| Sbjct 550 ATCTTCGAGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTGT 491 Query 6833 TCTCAGGTTTAACAATGGCCGACGAT 6858 || ||| |||||||||||||||||| Sbjct 490 TCAAAGGATTAACAATGGCCGACGAT 465 >seq250369 Length=726 Score = 93.3 bits (102), Expect = 3e-15 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 6703 GTCATTGGACTGAAGGGAAAAGAGAGAGAAGTTAAAAGGATTGGTCGAtttttttCACTA 6762 |||||||| ||| ||||||||| |||| | || ||| | || ||||||| | ||| Sbjct 487 GTCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTA 428 Query 6763 ATGTCTTGGGAACTACGAATGTACTTTGTAGTAACGGAATACTTGATTAAAAAGTTTTTT 6822 ||||||||||| || || |||||||||| |||| || || | |||||| | ||| Sbjct 427 ATGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTT 368 Query 6823 GTACCTTTGTTCTCAGGTTTAACAATGGCCGACGAT 6858 || || | ||| ||| || ||||||||| | ||| Sbjct 367 GTCCCCCTATTCAAAGGATTGACAATGGCCAATGAT 332 >seq22788 Length=2006 Score = 89.7 bits (98), Expect = 4e-14 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 6667 GAAATAAATGACAACGGTGTCAAAGAGAATAGTCTGGTCATTGGACTGAAGGGAAAAGAG 6726 || || ||||||||||| | | || ||| |||| || ||||| | || ||||| Sbjct 1843 GACATCAATGACAACGGCTTAGACGAAAATTACTTGGTTATCGGACTAAGAGGGAAAGAA 1784 Query 6727 AGAGAAGTTAAAAGGATTGGTCGAtttttttCACTAATGTCTTGGGAACTACGAATGTAC 6786 ||||| | || ||||| || ||| ||| | ||||||| ||| |||| || |||| Sbjct 1783 CGAGAAATGAAGAGGATCGGAAGATATTTCGCCTTAATGTCATGGAAACTCCGTGAGTAC 1724 Query 6787 TTTGTAGTAACGGAATACTTGATTAAAAAGTTTTTTGTACCTTTGTTCTCAGGTTTAACA 6846 ||||| | || || || |||| || |||| || ||| || || ||| || ||||| Sbjct 1723 TTTGTGATCACAGAGTATCTGATCAAGAAGTATTATGTTCCGTTATTCAAGGGGCTAACA 1664 Query 6847 ATGGCCGACGAT 6858 ||||| |||||| Sbjct 1663 ATGGCTGACGAT 1652 >seq110009 Length=642 Score = 86.0 bits (94), Expect = 5e-13 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 6667 GAAATAAATGACAACGGTGTCAAAGAGAATAGTCTGGTCATTGGACTGAAGGGAAAAGAG 6726 ||| |||| ||||| ||| | ||| | ||| || || ||||| || |||||| Sbjct 341 GAAGTAAACGACAATGGTCTGCCAGATGAGTCTCTTGTAATAGGACTCCGTGGTAAAGAG 400 Query 6727 AGAGAAGTTAAAAGGATTGGTCGAtttttttCACTAATGTCTTGGGAACTACGAATGTAC 6786 | || | |||||||| || |||| || | |||||||| |||| | ||| || Sbjct 401 CGCGAGATGAAAAGGATAGGAAGATTCTTCGCCCTAATGTCCTGGGCCTTGCGAGAATAT 460 Query 6787 TTTGTAGTAACGGAATACTTGATTAAAAAGTTTTTTGTACCTTTGTTCTCAGGTTTAACA 6846 ||||| | || |||| ||||| ||||| |||||||| ||||| || || ||||| Sbjct 461 TTTGTTTTGACCGAATTATTGATAAAAAACTTTTTTGTTCCTTTATTTGATGGACTAACA 520 Query 6847 ATGGCCGACGAT 6858 |||||||| ||| Sbjct 521 ATGGCCGATGAT 532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37340762209568