Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_033703.1 Length=9314 Score E Sequences producing significant alignments: (Bits) Value seq36779 91.5 9e-15 seq22788 86.0 4e-13 >seq36779 Length=13892 Score = 91.5 bits (100), Expect = 9e-15 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 3727 TGGATCTTACAGACACTGGGGACACCCATTTTTGGATTACTTTGAAGGATTGAACAAGTT 3786 |||||||| |||||||||||||||||| ||| ||||||| || |||| |||||| || || Sbjct 4871 TGGATCTTTCAGACACTGGGGACACCCCTTTCTGGATTATTTAGAAGAATTGAAGAAATT 4930 Query 3787 ATATGAACAAGTCCAAATG-GTCCGACCAATTGATGTCAATTACGCCAACATTTTGGCAA 3845 | |||| || || |||| | || | || || ||| ||||| || | | || | Sbjct 4931 ACATGACCAGGTGACAATGACTAAGAAC-ATAGACCCCAAATACGCAAAAAGGCTTGCTA 4989 Query 3846 GTGATCTCGCATACAAGGTCCT 3867 | |||||||||||||||||| Sbjct 4990 GCCGTCTCGCATACAAGGTCCT 5011 >seq22788 Length=2006 Score = 86.0 bits (94), Expect = 4e-13 Identities = 170/252 (67%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 4193 GAATTCCTATCAGAAATCAATGAGAACGGATTATCAAAGGAAGACCTTGTGATTGGTTTG 4252 || ||||| ||| |||||||| ||||| ||| | | || | || || || | Sbjct 1855 GAGTTCCTTCAAGACATCAATGACAACGGCTTAGACGAAAATTACTTGGTTATCGGACTA 1796 Query 4253 AAAGGGAAGGAGAGAGAGGTTAAGAGAACGGGACGATATTTCTCACTCATGAGTTGGAAT 4312 | |||||| || |||| | ||||| | ||| |||||||| | | ||| ||||| Sbjct 1795 AGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCCTTAATGTCATGGAAA 1736 Query 4313 CTAAGACTGTATTTTGTCATCACAGAGTATTTAATCAAGAAATATTATGTACCACTTTTT 4372 || | ||| ||||| |||||||||||| | |||||||| |||||||| || | || Sbjct 1735 CTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATTATGTTCCGTTATTC 1676 Query 4373 TCCGGGTTGACTATGGCTGACAGTTTTAATATGGTTATGAGAAAACTGATCGATCGTACA 4432 ||| | || ||||||||| | | | ||| |||| ||| |||| | | | || Sbjct 1675 AAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGATGATGAACCATTCA 1616 Query 4433 TCTGGGCAAGGA 4444 ||| |||||| Sbjct 1615 GATGGTCAAGGA 1604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 29593199947072