Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_033731.1 Length=12548 Score E Sequences producing significant alignments: (Bits) Value seq263735 140 3e-29 seq46121 111 1e-20 seq42553 78.8 7e-11 >seq263735 Length=2160 Score = 140 bits (154), Expect = 3e-29 Identities = 283/411 (69%), Gaps = 7/411 (2%) Strand=Plus/Plus Query 6221 GAGTCGCTAGTAATAGGTCTAAGAGCTAAAGAAAGAGAATTAAAATTAACAGGGAGGTTT 6280 ||||| ||||| ||||| || ||| |||||| | ||| | || || ||| || ||| Sbjct 1207 GAGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTT 1266 Query 6281 TTTGCTTTAATGTCTTGGGAGTTGAGAGAGTATTTTGTTATAACTGAGTGGCTCATAAAG 6340 ||| | |||||||| |||| || | ||||||||||| | || || | | ||||| Sbjct 1267 TTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAA 1326 Query 6341 AAG-TATTTCGTTCCGTTACTA-AGAGACTTAACAATGGCAGACGACTTGAATGATGTCA 6398 || | ||| || |||||| | | ||||| ||| ||||| || || | | ||| || | Sbjct 1327 AAACTTTTTTGTCCCGTTATTTGATAGACT-AACCATGGCTGATGATCTCACTGAAGTAA 1385 Query 6399 -TAAGTAAAATGTTGTCTAGTACATCAGGACAAGGGTTGGATGACTACTCAGTAGTATCT 6457 |||| || ||| || || | | || ||||| | || || ||| | | | Sbjct 1386 CTAAG-AAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGT 1444 Query 6458 ATTTCTAACCACTTAGATTACGAGAAATGGAACAATCACCAAAGGAAGGAATCAAATGAT 6517 ||| |||||||| | ||||| |||||||| |||||||| || ||||| || || | Sbjct 1445 ATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAG 1504 Query 6518 CCTGTATTCAGAGTGATGGGTCAATTTTTGGGAAAGCCTA-ACTTATTCACTAGGACACA 6576 |||||| |||||||||||||||||||| ||| | || | || || | |||| || Sbjct 1505 TATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGA-ACGGACTCA 1563 Query 6577 TGAGTTTTTCGAGAAATCGTTGATTTATTATGTTGATAGACCTGATTTGAT 6627 ||| ||||| || ||| | |||||||| || | | || ||||| || Sbjct 1564 TGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAAT 1614 >seq46121 Length=3043 Score = 111 bits (122), Expect = 1e-20 Identities = 224/327 (69%), Gaps = 4/327 (1%) Strand=Plus/Minus Query 6303 TGAGAGAGTATTTTGTTATAACTGAGTGGCTCAT-AAAGAAGTATTTCGTTCCGTTACTA 6361 ||||||| ||||| || | ||||| | || || |||||| |||||||||| | | Sbjct 1346 TGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAAC-ATTTCGTTCCACTGTTC 1288 Query 6362 AGAGACTTAACAATGGCAGACGACTTGAATGATGTCATAAGTAAAATGTTGTCTAGTACA 6421 || | | || ||||| || ||| | | || || | | | || ||||| || | || Sbjct 1287 CAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCA 1228 Query 6422 TCAGGACAAGGGTTGGATGACTACTCAGTAGTATCTATTTCTAACCACTTAGATTACGAG 6481 || ||||| | || || ||| | | | ||| |||||||| |||| ||||| Sbjct 1227 GATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAA 1168 Query 6482 AAATGGAACAATCACCAAAGGAAGGAATCAAATGATCCTGTATTCAGAGTGATGGGTCAA 6541 ||||||||||| || ||| |||| ||||| || | | ||| ||| ||||||||| || Sbjct 1167 AAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAG 1108 Query 6542 TTTTTGGGAAAGCCTAACTTATTCACTAGGACACATGAGTTTTTCGAGAAATCGT-TGAT 6600 || ||| | || || || |||| ||||| ||||| || || || ||| || || | Sbjct 1107 TTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGA-AAAGAGTCTGGT 1049 Query 6601 TTATTATGTTGATAGACCTGATTTGAT 6627 |||||||||| | ||| || || || Sbjct 1048 GTATTATGTTGGAATACCAGACTTAAT 1022 >seq42553 Length=2057 Score = 78.8 bits (86), Expect = 7e-11 Identities = 102/141 (72%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 6272 GGGAGGTTTTTTGCTTTAATGTCTTGGGAGTTGAGAGAGTATTTTGTTATAACTGAGTGG 6331 || || ||||||||| | ||||| ||||| | ||||||| ||||| | || |||| Sbjct 578 GGAAGATTTTTTGCTCTCATGTCCTGGGATCTTCGAGAGTACTTTGTCCTCACAGAGTAC 519 Query 6332 CTCATAAAGAAGTATTTCGTTCCGTTACTAAGAGACTTAACAATGGCAGACGACTTGAAT 6391 ||||| || || | ||||| || || | | || ||||||||||| ||||| ||| | Sbjct 518 CTCATCAAAGAGCACTTCGTCCCCTTGTTCAAAGGATTAACAATGGCCGACGATCTGACT 459 Query 6392 GATGTCATAAGTAAAATGTTG 6412 || || | ||| || ||| || Sbjct 458 GAGGTTACAAGGAAGATGATG 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39908398117888