Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq13540 118 3e-24 seq2708 113 1e-22 seq6998 91.5 5e-16 >seq13540 Length=5893 Score = 118 bits (130), Expect = 3e-24 Identities = 114/145 (79%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 378 AATCTCGTTAATCCATTCATGCGCGTCA---CTAATTA---GATGACGAGGCATTTGGCT 431 || || ||||| |||||||| | ||| ||| || |||||||||| |||||||| Sbjct 1422 AAACTAGTTAAACCATTCATATTCATCATCACTATTTGTATGATGACGAGGTATTTGGCT 1363 Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||||| || | ||| ||| | | |||||||| ||||||| | |||||||||||| Sbjct 1362 ACCTTATGATCTTAATATTTAATACAGCCGTTTAAACGCGCTTACTCGAATTTCTTCACA 1303 Query 492 TTGACATTCAGAGCACTGGGCAGAA 516 ||||||||||||||||||||||||| Sbjct 1302 TTGACATTCAGAGCACTGGGCAGAA 1278 >seq2708 Length=1808 Score = 113 bits (124), Expect = 1e-22 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 ||||||||||||| ||||| ||||||||||| | ||||| ||||| |||||||||||| Sbjct 482 TAAGAGAGTCATAATTACTTCCGCCGTTTACTCTCGCTTACTTGAAATTCTTCACTTTGG 423 Query 496 CATTCAGAGCACTGGGCAGAAATCA 520 |||||||||||||| |||||||||| Sbjct 422 CATTCAGAGCACTGTGCAGAAATCA 398 >seq6998 Length=3509 Score = 91.5 bits (100), Expect = 5e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 |||||||||| | |||||||||| ||||||||||| ||||||||||||| |||||||| Sbjct 121 GATAGGGACATTAGGAATCTCGTCAATCCATTCATATGCGTCACTAATTAAATGACGAGA 62 Query 423 CATTTGGC 430 |||||||| Sbjct 61 CATTTGGC 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1631970316480