Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq56109 168 2e-39 seq82658 84.2 7e-14 seq4172 75.2 3e-11 >seq56109 Length=5720 Score = 168 bits (186), Expect = 2e-39 Identities = 203/272 (75%), Gaps = 8/272 (3%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCAAAA---GAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||| | || || || ||| ||| ||||| | ||| ||| Sbjct 1832 ACTCATTCCAATTACTGGGCCTCTAATATGAATCCTCTATTGTTATTTTTCGTCTCTAAA 1891 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGG--AT--GTGGTAG 115 ||| || | | || ||||||||| || ||| |||||||||||| | || ||||||| Sbjct 1892 TCCTCGAGCTGATATCGGGTAATTTCCGTGCCAGCTGCCTTCCTTAGCCATTAGTGGTAG 1951 Query 116 CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCA 175 || || |||||||||||||||||||||||| ||||||||| ||||||| ||| ||| Sbjct 1952 CCATTCCTCAGGCTCCCTCTCCGGAATCGAGGCCTAATTCCGTGTTACCCTTTGGATCCA 2011 Query 176 TGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC 235 |||| | || || |||||||| ||||||||||||||||| ||||||| | | | | Sbjct 2012 TGGTTGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGGTCTGTAGT 2071 Query 236 CGGCTCAAGGCCATGCGATTCGTTAAGTTATT 267 ||| |||| |||| | | || |||||||| Sbjct 2072 CGGTACAAGACCATACTA-TCAGCAAGTTATT 2102 >seq82658 Length=2320 Score = 84.2 bits (92), Expect = 7e-14 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 117 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 |||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 2 CGTTTCTCAGGCTCCCTCTCCGGAATCGAATCCTGATTCCCCGTTACCCGT 52 >seq4172 Length=3563 Score = 75.2 bits (82), Expect = 3e-11 Identities = 92/124 (74%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA---GAGCCCTGTATCAGTATTTATTGTCACTA 57 ||| ||||||||||||||| ||| || ||| |||| || ||||||| ||||||| Sbjct 2106 GTATTCATTCCAATTACAATACCTCTAATATGAGTCCTGAATTCTTATTTATCGTCACTA 2047 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 | || | | |||| || || ||| || |||||||| || ||| |||||||||||| Sbjct 2046 CACCCTCTAGATGGGAGGGGATATTTT-CGATCCTGCTGCATTTCTTAGATGTGGTAGCC 1988 Query 118 GTTT 121 ||| Sbjct 1987 TTTT 1984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507416808960