Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq44071 208 1e-51 seq23125 98.7 1e-18 seq24458 93.3 6e-17 seq8404 93.3 6e-17 seq37430 75.2 2e-11 >seq44071 Length=3925 Score = 208 bits (230), Expect = 1e-51 Identities = 190/234 (81%), Gaps = 7/234 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||| | Sbjct 3445 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-C 3502 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||||||| | ||||||| ||||| | | |||||| | || Sbjct 3503 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAACGGGTT 3562 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| | ||||| || || || | ||| | | ||||||||||||||||||| Sbjct 3563 GCCCGGGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGCG 3619 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||||| |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 3620 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 3672 >seq23125 Length=557 Score = 98.7 bits (108), Expect = 1e-18 Identities = 63/66 (95%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 366 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAA-TTC 309 Query 61 CTCGTT 66 |||||| Sbjct 308 CTCGTT 303 >seq24458 Length=288 Score = 93.3 bits (102), Expect = 6e-17 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 277 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 219 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 218 AATCTCGGGTGGC 206 >seq8404 Length=1966717 Score = 93.3 bits (102), Expect = 6e-17 Identities = 114/153 (75%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 117 ||||||||| | | | |||||||| | ||||||| || || | |||||| | Sbjct 1178638 TTCCTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCATGAAGGCGTTTCAACGG 1178579 Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTC-GTTGAATACATCAGTGTAGCGCGCG 175 || ||||| ||| | ||||| || ||| | | ||| | | |||||| |||||||| Sbjct 1178578 GTTGCCCGGGCCTCTAGGCCA----GAGAGAATATGCTGATTCCTTCAGTGAAGCGCGCG 1178523 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACC 208 |||||||||| |||||||||||||||||||||| Sbjct 1178522 TGCGGCCCAGGACATCTAAGGGCATCACAGACC 1178490 >seq37430 Length=610 Score = 75.2 bits (82), Expect = 2e-11 Identities = 65/77 (84%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 8 GGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTG 67 ||||||| ||||| || |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 536 GGGCAGG-ACGTAATCTACGCGAGCTT-ATGACTCGCGCTTACTAGGAA-TTCCTCGTTT 592 Query 68 AAGACCAACAATTGCAA 84 | | | |||||||| Sbjct 593 ATGGGGGATAATTGCAA 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751562543035