Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq41782 98.7 2e-18 seq3301 96.9 6e-18 seq7936 91.5 3e-16 seq50588 87.8 3e-15 seq44072 87.8 3e-15 seq7214 77.0 6e-12 >seq41782 Length=81921 Score = 98.7 bits (108), Expect = 2e-18 Identities = 104/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||||||||||| ||||| | ||||| || ||||||||||||||| Sbjct 29075 GTAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTT 29134 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||| ||||| ||| | |||||||| || |||| | ||||||||| ||||| Sbjct 29135 GGATCGTCGCAAGACGAACATCAGCGAAAGCATTTGCCAAAGGTGTTTTCATCAATCA-A 29193 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 29194 GAACGAAAGTTAGAGG 29209 >seq3301 Length=52146 Score = 96.9 bits (106), Expect = 6e-18 Identities = 103/133 (77%), Gaps = 10/133 (8%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC------CTTTGCTCGAATACAT-T 125 |||||||||||| ||||||||||| ||||||| ||| ||| ||||| | Sbjct 24142 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAATATTTCG 24083 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA--CCGCCG 183 |||||||||||||||||| || | |||||||||||||||||||| || | ||| | Sbjct 24082 TGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAGG 24024 Query 184 TAATGATTAATAG 196 ||||||||||||| Sbjct 24023 TAATGATTAATAG 24011 >seq7936 Length=42434 Score = 91.5 bits (100), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 9/148 (6%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| || | ||| | |||||||||||| ||||||||||| || Sbjct 26198 TGCTCTTCAGTGAGTGTCGAGGTGGGCCGACAATTTTACTTTGAACAAATTAGAGTGCTC 26257 Query 100 AAAGCAGGC------CTTTGCTCGAATACAT-TAGCATGGAATAATAGAATAGGACGTGC 152 ||||| ||| ||| ||||| | |||||||||||||||||| || | | Sbjct 26258 AAAGCGGGCTCAAAATGCCGCTTGAATATTTCGTGCATGGAATAATAGAATATGATCT-C 26316 Query 153 GGTTCTATTTTGTTGG-TTTCTAGGACC 179 |||||||||||||||| ||||||| ||| Sbjct 26317 GGTTCTATTTTGTTGGTTTTCTAGTACC 26344 >seq50588 Length=153033 Score = 87.8 bits (96), Expect = 3e-15 Identities = 104/139 (75%), Gaps = 8/139 (6%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| || | ||| | |||||||||||| ||||||||||| || Sbjct 151056 TGCTCTTCAGTGAGTGTCGAGGTGGGCCGACAATTTTACTTTGAACAAATTAGAGTGCTC 150997 Query 100 AAAGCAGGC------CTTTGCTCGAATACAT-TAGCATGGAATAATAGAATAGGACGTGC 152 ||||| ||| ||| ||||| | |||||||||||||||||| || | | Sbjct 150996 AAAGCGGGCTCAAAATGCCGCTTGAATATTTCGTGCATGGAATAATAGAATATGATCT-C 150938 Query 153 GGTTCTATTTTGTTGGTTT 171 ||||||||||||||||||| Sbjct 150937 GGTTCTATTTTGTTGGTTT 150919 >seq44072 Length=236 Score = 87.8 bits (96), Expect = 3e-15 Identities = 104/139 (75%), Gaps = 8/139 (6%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| | | ||| | |||||||||||| ||||||||||| || Sbjct 138 TGCTCTTCAGTGAGTGTCGAGATGGGCCGACAATTTTACTTTGAACAAATTAGAGTGCTC 79 Query 100 AAAGCAGGC------CTTTGCTCGAATACAT-TAGCATGGAATAATAGAATAGGACGTGC 152 ||||| ||| |||| ||||| | |||||||||||||||||| || | | Sbjct 78 AAAGCGGGCTCAAAATGCTGCTTGAATATTTCGTGCATGGAATAATAGAATATGATCT-C 20 Query 153 GGTTCTATTTTGTTGGTTT 171 ||||||||||||||||||| Sbjct 19 GGTTCTATTTTGTTGGTTT 1 >seq7214 Length=484 Score = 77.0 bits (84), Expect = 6e-12 Identities = 73/92 (79%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 227 CAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGAT 286 |||||||||||||||||||| ||||| ||| | |||||||| || |||| | | Sbjct 42 CAGAGGTGAAATTCTTGGATCGTCGCAAGACGAACATCAGCGAAAGCATTTGCCAAAGGT 101 Query 287 GTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||| ||||| ||||||||||||| || Sbjct 102 GTTTTCATCAATCA-AGAACGAAAGTTAGAGG 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914650431552