Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq24458 244 2e-62 seq44071 226 5e-57 seq30555 136 6e-30 seq40381 129 9e-28 seq8404 80.6 4e-13 >seq24458 Length=288 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 278 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 220 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 219 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 161 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 160 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 101 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 100 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 41 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 40 ATCAATCTGTC 30 >seq44071 Length=3925 Score = 226 bits (250), Expect = 5e-57 Identities = 218/282 (77%), Gaps = 37/282 (13%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3597 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG 3656 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------------C 116 | |||| || | ||||| |||||| |||||||||||||| | Sbjct 3657 C-TCAATCT-CGTGTGGCTCGAAGCCGCCGGTCCCTCTAAGAAGAATTTTAATACGTCGC 3714 Query 117 CAGCCAC-----CAACCATAGTCGA-----------TGGGG----CTATTTAGCAGGTTA 156 ||| | | ||| |||||| || | |||||||||||| || Sbjct 3715 CAGTGAGTTGCACGACCGAAGTCGAGCACACCTAAATGACGACGCCTATTTAGCAGGCTA 3774 Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 3775 GAGTCTCGTTCGTTACCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCAT 3834 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| |||||||||||||||||| |||||||| Sbjct 3835 GCACCACCACCCACCGAATCAAGAAAGAGCTATTAATCTGTC 3876 >seq30555 Length=14928 Score = 136 bits (150), Expect = 6e-30 Identities = 83/88 (94%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||| Sbjct 14489 CTATTTAGCAGGCTAGAGTCTCGTTCGTTACCGGAATTAACCAGACAAATCGCTCCACCA 14430 Query 202 ACTAAGAACGGCCATGCACCACCACCCA 229 |||||||||||||||||||||||||||| Sbjct 14429 ACTAAGAACGGCCATGCACCACCACCCA 14402 >seq40381 Length=18749 Score = 129 bits (142), Expect = 9e-28 Identities = 79/84 (94%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 3742 GAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAA 3801 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| | |||||||| Sbjct 3802 TCAAGAAAGAGCTGTTAATCTGTC 3825 >seq8404 Length=1966717 Score = 80.6 bits (88), Expect = 4e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 63 ||| |||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 1178541 TCCTTCAGTGAAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACC 1178490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796336481769