Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq44072 75.2 1e-11 seq7936 75.2 1e-11 seq3301 73.4 4e-11 >seq44072 Length=236 Score = 75.2 bits (82), Expect = 1e-11 Identities = 83/108 (77%), Gaps = 12/108 (11%) Strand=Plus/Minus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC------CTTTGCTCGAATACATTA 65 |||||||||||| ||||||||| | ||||||| ||| |||| |||| ||| Sbjct 105 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCTGCTTGAAT--ATTT 48 Query 66 C---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 | ||||||||||||||||| || | |||||||||||||| ||||| Sbjct 47 CGTGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTT 1 >seq7936 Length=42434 Score = 75.2 bits (82), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 13/117 (11%) Strand=Plus/Plus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC------CTTTGCTCGAATACATTA 65 |||||||||||| ||||||||| | ||||||| ||| ||| |||| ||| Sbjct 26231 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAAT--ATTT 26288 Query 66 C---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGG-TTTCTAGGACC 118 | ||||||||||||||||| || | |||||||||||||| || ||||||| ||| Sbjct 26289 CGTGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCTAGTACC 26344 >seq3301 Length=52146 Score = 73.4 bits (80), Expect = 4e-11 Identities = 99/134 (74%), Gaps = 13/134 (10%) Strand=Plus/Minus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC------CTTTGCTCGAATACATTA 65 |||||||||||| ||||||||| | ||||||| ||| ||| |||| ||| Sbjct 24142 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAAT--ATTT 24085 Query 66 C---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC-CGCC 121 | ||||||||||||||||| || | |||||||||||||| ||||| || || | Sbjct 24084 CGTGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGA 24026 Query 122 CGTAATGATAAATA 135 |||||||| |||| Sbjct 24025 GGTAATGATTAATA 24012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511702156960