Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq44071 219 8e-55 seq24458 100 5e-19 seq23125 96.9 7e-18 seq8404 96.9 7e-18 seq37430 82.4 1e-13 >seq44071 Length=3925 Score = 219 bits (242), Expect = 8e-55 Identities = 206/258 (80%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | |||| || | ||||| |||||||||||||||| Sbjct 3698 CTTCTTAGAGGGACCGGCGGCTTCGAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 3641 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| || || | |||| Sbjct 3640 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCATGTTCT--- 3584 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || ||||| ||| | ||| || | | |||||| ||||||||||||| | | ||| Sbjct 3583 CCCTGGCCTAGAGGCCCGGGCAACCCGTTGAAACTCCTTCGTGCTGGGGATTGGGGTTTG 3524 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| ||||||||||||| ||||| ||| |||||||||| Sbjct 3523 CAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 3464 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 3463 AAGTCCCTGCCCTTTGTA 3446 >seq24458 Length=288 Score = 100 bits (110), Expect = 5e-19 Identities = 85/101 (84%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 180 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 237 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||| | |||| ||||||||||||||||||| Sbjct 238 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAC 278 >seq23125 Length=557 Score = 96.9 bits (106), Expect = 7e-18 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 266 AACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325 |||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||| Sbjct 303 AACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTTGATTACGTCCCTGCCCTTT 362 Query 326 GTA 328 ||| Sbjct 363 GTA 365 >seq8404 Length=1966717 Score = 96.9 bits (106), Expect = 7e-18 Identities = 114/152 (75%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 123 GGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGA 182 |||||||||||||||||||||| |||||||||||||||||| |||||| || || | Sbjct 1178490 GGTCTGTGATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTTCACTGAAGGAATCAGCAT 1178549 Query 183 GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242 ||| || | ||||| ||| | ||| || | | |||| | || |||||||||| Sbjct 1178550 ATTC-TCTC--TGGCCTAGAGGCCCGGGCAACCCGTTGAAACGCCTTCATGCTGGGGATT 1178606 Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAA 274 | | |||||||||| | | | ||||||||| Sbjct 1178607 GGGGTTTGCAATTATCCCCCATAAACGAGGAA 1178638 >seq37430 Length=610 Score = 82.4 bits (90), Expect = 1e-13 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 |||||||||| | | | |||||||||| ||||||||||||| ||||| ||| ||||| | Sbjct 609 TTGCAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTAG 550 Query 308 ATTACGTCCCTGCCC 322 ||||||| ||||||| Sbjct 549 ATTACGT-CCTGCCC 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946631215872